Variant report

Variant	rs9525010
Chromosome Location	chr13:96187398-96187399
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	EP300	chr13:96187317-96188073	A549	lung:	n/a	n/a
2	HA-E2F1	chr13:96187334-96188067	MCF-7	breast:	n/a	n/a
3	JUND	chr13:96187292-96188044	HCT-116	colon:	n/a	chr13:96187649-96187660
4	JUND	chr13:96187295-96187981	HCT-116	colon:	n/a	chr13:96187649-96187660
5	MAX	chr13:96187193-96188151	A549	lung:	n/a	n/a
6	FOSL2	chr13:96187360-96188047	MCF-7	breast:	n/a	chr13:96187724-96187735
7	GATA3	chr13:96187246-96187436	SH-SY5Y	brain:	n/a	n/a
8	ZNF217	chr13:96187352-96188031	MCF-7	breast:	n/a	n/a
9	CBX3	chr13:96187375-96188033	HCT-116	colon:	n/a	n/a
10	CBX3	chr13:96187323-96188227	HCT-116	colon:	n/a	n/a
11	JUND	chr13:96187347-96187926	SK-N-SH	brain:	n/a	chr13:96187649-96187660
12	HDAC2	chr13:96187369-96187935	MCF-7	breast:	n/a	n/a
13	RXRA	chr13:96187340-96188061	SK-N-SH	brain:	n/a	n/a
14	NR2F2	chr13:96187369-96188013	MCF-7	breast:	n/a	n/a
15	SIN3AK20	chr13:96187256-96188118	MCF-7	breast:	n/a	n/a
16	GATA3	chr13:96187263-96188061	SK-N-SH	brain:	n/a	n/a
17	FOSL1	chr13:96187242-96188092	HCT-116	colon:	n/a	chr13:96187649-96187660
18	SP1	chr13:96187263-96188015	HCT-116	colon:	n/a	n/a
19	FOSL2	chr13:96187358-96188033	MCF-7	breast:	n/a	chr13:96187724-96187735
20	POLR2A	chr13:96187390-96187859	PANC-1	pancreas:	n/a	n/a
21	TCF12	chr13:96187374-96188074	SK-N-SH	brain:	n/a	n/a
22	GATA3	chr13:96187095-96188072	MCF-7	breast:	n/a	n/a
23	EGR1	chr13:96187350-96188252	HCT-116	colon:	n/a	n/a
24	BCL3	chr13:96187374-96187984	A549	lung:	n/a	n/a
25	GATA3	chr13:96187296-96187985	SK-N-SH	brain:	n/a	n/a
26	FOSL2	chr13:96187146-96188241	A549	lung:	n/a	chr13:96187724-96187735
27	SP1	chr13:96187205-96188087	HCT-116	colon:	n/a	n/a
28	SP1	chr13:96187264-96188142	A549	lung:	n/a	n/a
29	GATA3	chr13:96187389-96187968	A549	lung:	n/a	n/a
30	JUND	chr13:96187314-96188007	MCF-7	breast:	n/a	chr13:96187649-96187660
31	TCF7L2	chr13:96187364-96187977	PANC-1	pancreas:	n/a	n/a
32	FOXA1	chr13:96187369-96188007	HepG2	liver:	n/a	n/a
33	GATA3	chr13:96187287-96188023	MCF-7	breast:	n/a	n/a
34	GATA3	chr13:96187280-96188024	MCF-7	breast:	n/a	n/a
35	JUND	chr13:96187354-96188016	A549	lung:	n/a	chr13:96187649-96187660
36	JUN	chr13:96187326-96188112	K562	blood:	n/a	n/a
37	NR2F2	chr13:96187295-96188069	MCF-7	breast:	n/a	n/a
38	CEBPB	chr13:96187371-96187995	A549	lung:	n/a	n/a
39	FOS	chr13:96187018-96187981	MCF10A-Er-Src	breast:	n/a	chr13:96187649-96187660
40	GATA2	chr13:96187347-96187674	SH-SY5Y	brain:	n/a	n/a
41	RCOR1	chr13:96187393-96187937	IMR90	lung:	n/a	n/a
42	FOS	chr13:96186838-96187994	MCF10A-Er-Src	breast:	n/a	chr13:96187649-96187660
43	GATA2	chr13:96185881-96188177	HUVEC	blood vessel:	n/a	n/a
44	SP1	chr13:96187319-96188120	A549	lung:	n/a	n/a
45	EP300	chr13:96187284-96188144	A549	lung:	n/a	chr13:96187288-96187297
46	TCF12	chr13:96187373-96187948	ECC-1	luminal epithelium:	n/a	n/a
47	POLR2A	chr13:96187374-96187989	PANC-1	pancreas:	n/a	n/a
48	PBX3	chr13:96187349-96188043	SK-N-SH	brain:	n/a	n/a
49	FOS	chr13:96187217-96188088	HUVEC	blood vessel:	n/a	chr13:96187649-96187660
50	FOSL2	chr13:96187383-96188021	SK-N-SH	brain:	n/a	chr13:96187724-96187735

Variant related genes	Relation type
CLDN10-AS1	TF binding region

Extended variants
information (count: 2 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:1)

rs_ID	r²[population]
rs9525011	0.99[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv900933	chr13:96138087-96215289	Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Active TSS Weak transcription Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:40 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:96182600-96187600	Weak transcription	HSMMtube	muscle
2	chr13:96183000-96187400	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
3	chr13:96183000-96188800	Weak transcription	Primary hematopoietic stem cells short term culture	blood
4	chr13:96183000-96192800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
5	chr13:96185800-96189000	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
6	chr13:96185800-96189000	Enhancers	HepG2	liver
7	chr13:96185800-96189000	Enhancers	HUVEC	blood vessel
8	chr13:96186000-96188400	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
9	chr13:96186000-96189000	Enhancers	Osteobl	bone
10	chr13:96186200-96187400	Weak transcription	Esophagus	oesophagus
11	chr13:96186200-96187600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
12	chr13:96186200-96187600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
13	chr13:96186200-96189400	Enhancers	Muscle Satellite Cultured Cells	--
14	chr13:96186400-96187600	Enhancers	Cortex derived primary cultured neurospheres	brain
15	chr13:96186400-96187600	Weak transcription	Stomach Mucosa	stomach
16	chr13:96186400-96188200	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
17	chr13:96186400-96188800	Weak transcription	HUES6 Cell Line	embryonic stem cell
18	chr13:96186400-96188800	Weak transcription	HUES64 Cell Line	embryonic stem cell
19	chr13:96186400-96188800	Weak transcription	iPS-15b Cell Line	embryonic stem cell
20	chr13:96186400-96188800	Weak transcription	iPS-18 Cell Line	embryonic stem cell
21	chr13:96186400-96188800	Weak transcription	Fetal Kidney	kidney
22	chr13:96186400-96189400	Enhancers	NH-A	brain
23	chr13:96186400-96193000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
24	chr13:96186600-96189600	Weak transcription	iPS-20b Cell Line	embryonic stem cell
25	chr13:96187000-96188200	Enhancers	Pancreatic Islets	Pancreatic Islet
26	chr13:96187000-96188200	Flanking Active TSS	A549	lung
27	chr13:96187000-96188400	Enhancers	NHEK	skin
28	chr13:96187000-96188800	Enhancers	HMEC	breast
29	chr13:96187000-96189000	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
30	chr13:96187200-96187400	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
31	chr13:96187200-96187400	Enhancers	Brain Anterior Caudate	brain
32	chr13:96187200-96187800	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
33	chr13:96187200-96188200	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
34	chr13:96187200-96188200	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
35	chr13:96187200-96188200	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
36	chr13:96187200-96188200	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
37	chr13:96187200-96188200	Enhancers	Pancreas	Pancrea
38	chr13:96187200-96188200	Enhancers	NHDF-Ad	bronchial
39	chr13:96187200-96188400	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
40	chr13:96187200-96188400	Enhancers	Hela-S3	cervix

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