Variant report

Variant	rs9526526
Chromosome Location	chr13:49726011-49726012
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 30 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:26)

rs_ID	r²[population]
rs1359066	0.82[AFR][1000 genomes]
rs1407827	0.81[ASN][1000 genomes]
rs1407829	0.85[AFR][1000 genomes]
rs1535922	0.80[EUR][1000 genomes]
rs1983805	0.82[AFR][1000 genomes];0.81[ASN][1000 genomes]
rs2181537	0.85[AFR][1000 genomes]
rs2224742	0.81[ASN][1000 genomes]
rs35018425	0.84[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs4245350	0.85[AMR][1000 genomes];0.84[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs4942800	0.81[AFR][1000 genomes]
rs6561504	0.82[AFR][1000 genomes];0.84[AMR][1000 genomes];0.82[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7139746	0.81[ASN][1000 genomes]
rs7139819	0.83[AMR][1000 genomes];0.87[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs716722	0.83[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7317908	0.81[AFR][1000 genomes];0.85[AMR][1000 genomes];0.84[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7333285	0.81[AFR][1000 genomes];0.85[AMR][1000 genomes];0.84[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7338529	0.81[ASN][1000 genomes]
rs7994845	0.84[AMR][1000 genomes];0.85[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7996151	0.80[EUR][1000 genomes]
rs9526525	0.84[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs9535141	0.82[AFR][1000 genomes]
rs9535155	0.84[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs9535156	0.87[AMR][1000 genomes];0.87[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs9535166	0.80[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs9562870	0.83[AFR][1000 genomes];0.85[AMR][1000 genomes];0.83[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs9568154	0.81[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1049117	chr13:49089476-49928945	Enhancers Strong transcription Weak transcription Genic enhancers Active TSS Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	42 gene(s)	inside rSNPs	diseases
2	esv1793883	chr13:49543723-49789164	Enhancers Strong transcription Weak transcription Active TSS Genic enhancers ZNF genes & repeats Flanking Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	20 gene(s)	inside rSNPs	diseases
3	esv1796840	chr13:49671215-49760666	Weak transcription Enhancers Strong transcription ZNF genes & repeats Active TSS Genic enhancers Flanking Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	5 gene(s)	inside rSNPs	diseases
4	nsv1052168	chr13:49691378-49743696	Strong transcription Weak transcription ZNF genes & repeats Enhancers Genic enhancers Flanking Active TSS Active TSS Transcr. at gene 5' and 3'	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:106 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:49687600-49789000	Weak transcription	Stomach Mucosa	stomach
2	chr13:49693600-49737200	Weak transcription	Spleen	Spleen
3	chr13:49705400-49726600	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
4	chr13:49705800-49737200	Weak transcription	Right Ventricle	heart
5	chr13:49706000-49737400	Weak transcription	Gastric	stomach
6	chr13:49706000-49748200	Weak transcription	K562	blood
7	chr13:49706600-49737000	Weak transcription	Placenta Amnion	Placenta Amnion
8	chr13:49706800-49737400	Weak transcription	Small Intestine	intestine
9	chr13:49707800-49737200	Weak transcription	Lung	lung
10	chr13:49709600-49737200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
11	chr13:49711600-49737200	Weak transcription	Colonic Mucosa	Colon
12	chr13:49711800-49726600	Strong transcription	Placenta	Placenta
13	chr13:49711800-49736600	Weak transcription	Pancreas	Pancrea
14	chr13:49714200-49737400	Weak transcription	Skeletal Muscle Male	skeletal muscle
15	chr13:49715000-49737200	Weak transcription	Aorta	Aorta
16	chr13:49715400-49737600	Weak transcription	HSMMtube	muscle
17	chr13:49719600-49726400	Strong transcription	Fetal Thymus	thymus
18	chr13:49720400-49732400	Weak transcription	iPS-15b Cell Line	embryonic stem cell
19	chr13:49720600-49737600	Weak transcription	HepG2	liver
20	chr13:49720600-49742200	Weak transcription	Hela-S3	cervix
21	chr13:49721400-49726200	ZNF genes & repeats	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
22	chr13:49721400-49726600	ZNF genes & repeats	Primary hematopoietic stem cells	blood
23	chr13:49721600-49726400	ZNF genes & repeats	Breast Myoepithelial Primary Cells	Breast
24	chr13:49721600-49726400	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
25	chr13:49721600-49726400	Strong transcription	Rectal Mucosa Donor 29	rectum
26	chr13:49721600-49737000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
27	chr13:49721600-49737400	Weak transcription	Brain Substantia Nigra	brain
28	chr13:49721600-49737400	Weak transcription	Colon Smooth Muscle	Colon
29	chr13:49721600-49737600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
30	chr13:49721600-49738000	Weak transcription	Brain Angular Gyrus	brain
31	chr13:49721800-49736400	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
32	chr13:49721800-49738000	Weak transcription	Primary T killer memory cells from peripheral blood	blood
33	chr13:49721800-49751400	Weak transcription	NH-A	brain
34	chr13:49722000-49726600	ZNF genes & repeats	Primary hematopoietic stem cells G-CSF-mobilized Female	--
35	chr13:49722000-49726600	ZNF genes & repeats	Primary hematopoietic stem cells G-CSF-mobilized Male	--
36	chr13:49722000-49737400	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
37	chr13:49722200-49726600	ZNF genes & repeats	Pancreatic Islets	Pancreatic Islet
38	chr13:49722400-49726200	ZNF genes & repeats	Fetal Muscle Trunk	muscle
39	chr13:49722400-49726400	ZNF genes & repeats	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
40	chr13:49722400-49726600	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
41	chr13:49722400-49738000	Weak transcription	NHEK	skin
42	chr13:49722600-49726200	ZNF genes & repeats	Fetal Intestine Large	intestine
43	chr13:49722600-49726600	ZNF genes & repeats	Fetal Lung	lung
44	chr13:49722800-49752800	Weak transcription	Psoas Muscle	Psoas
45	chr13:49723400-49726200	ZNF genes & repeats	Fetal Brain Male	brain
46	chr13:49723400-49726600	ZNF genes & repeats	Fetal Kidney	kidney
47	chr13:49723600-49726400	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
48	chr13:49723800-49726600	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
49	chr13:49724000-49726400	Strong transcription	Foreskin Fibroblast Primary Cells skin01	Skin
50	chr13:49724000-49737800	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood

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