Variant report

Variant	rs9526530
Chromosome Location	chr13:49800103-49800104
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 6 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:4)

rs_ID	r²[population]
rs9526512	1.00[AFR][1000 genomes];0.82[AMR][1000 genomes]
rs9526529	1.00[AFR][1000 genomes];0.81[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs9535151	1.00[AFR][1000 genomes]
rs9535152	1.00[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1049117	chr13:49089476-49928945	Enhancers Strong transcription Weak transcription Genic enhancers Active TSS Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	42 gene(s)	inside rSNPs	diseases
2	nsv832607	chr13:49756458-49920894	Flanking Bivalent TSS/Enh Enhancers Strong transcription Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	12 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:12 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:49798600-49800800	Enhancers	Primary neutrophils fromperipheralblood	blood
2	chr13:49799000-49800200	Enhancers	HepG2	liver
3	chr13:49799400-49800200	Enhancers	Primary monocytes fromperipheralblood	blood
4	chr13:49799400-49800200	Enhancers	Left Ventricle	heart
5	chr13:49799400-49800200	Enhancers	Pancreas	Pancrea
6	chr13:49799400-49800200	Enhancers	Psoas Muscle	Psoas
7	chr13:49799400-49800400	Enhancers	Liver	Liver
8	chr13:49799600-49800200	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
9	chr13:49799800-49801000	Enhancers	Stomach Smooth Muscle	stomach
10	chr13:49799800-49802400	Weak transcription	Monocytes-CD14+_RO01746	blood
11	chr13:49800000-49800200	Bivalent Enhancer	Foreskin Keratinocyte Primary Cells skin03	Skin
12	chr13:49800000-49800200	Enhancers	Right Atrium	heart

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links