Variant report

Variant	rs9527121
Chromosome Location	chr13:54238301-54238302
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 31 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:3)

rs_ID	r²[population]
rs61954138	0.92[AFR][1000 genomes];0.80[AMR][1000 genomes];0.86[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9536494	0.85[AFR][1000 genomes];0.85[AMR][1000 genomes];0.88[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9536516	0.86[EUR][1000 genomes];0.93[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:28 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1044137	chr13:54124103-54521120	Enhancers Weak transcription Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
2	nsv541777	chr13:54124103-54521120	Enhancers Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Weak transcription Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
3	nsv527779	chr13:54125624-54249153	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases
4	nsv900091	chr13:54182173-54272104	Enhancers Weak transcription Active TSS ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases
5	nsv1047	chr13:54230840-54242364	ZNF genes & repeats Weak transcription	n/a	n/a	inside rSNPs	diseases
6	nsv561680	chr13:54234639-54240231	Weak transcription ZNF genes & repeats	n/a	n/a	inside rSNPs	diseases
7	esv3510774	chr13:54234664-54240359	Weak transcription ZNF genes & repeats	n/a	n/a	inside rSNPs	diseases
8	esv3510763	chr13:54234697-54240320	ZNF genes & repeats Weak transcription	n/a	n/a	inside rSNPs	diseases
9	esv3510752	chr13:54234697-54240325	ZNF genes & repeats Weak transcription	n/a	n/a	inside rSNPs	diseases
10	esv3510741	chr13:54234711-54240279	Weak transcription ZNF genes & repeats	n/a	n/a	inside rSNPs	diseases
11	esv3510785	chr13:54234771-54240255	Weak transcription ZNF genes & repeats	n/a	n/a	inside rSNPs	diseases
12	esv14162	chr13:54234773-54240264	Weak transcription ZNF genes & repeats	n/a	n/a	inside rSNPs	diseases
13	nsv561681	chr13:54237038-54239110	ZNF genes & repeats Weak transcription	n/a	n/a	inside rSNPs	diseases
14	nsv561682	chr13:54237038-54239175	Weak transcription ZNF genes & repeats	n/a	n/a	inside rSNPs	diseases
15	nsv561683	chr13:54237038-54239887	Weak transcription ZNF genes & repeats	n/a	n/a	inside rSNPs	diseases
16	nsv561684	chr13:54237038-54240106	ZNF genes & repeats Weak transcription	n/a	n/a	inside rSNPs	diseases
17	nsv561685	chr13:54237038-54240173	ZNF genes & repeats Weak transcription	n/a	n/a	inside rSNPs	diseases
18	nsv561686	chr13:54237038-54240231	Weak transcription ZNF genes & repeats	n/a	n/a	inside rSNPs	diseases
19	nsv561687	chr13:54237435-54239997	Weak transcription ZNF genes & repeats	n/a	n/a	inside rSNPs	diseases
20	nsv561688	chr13:54237664-54239440	Weak transcription ZNF genes & repeats	n/a	n/a	inside rSNPs	diseases
21	nsv561689	chr13:54237664-54239567	ZNF genes & repeats Weak transcription	n/a	n/a	inside rSNPs	diseases
22	nsv561690	chr13:54237664-54239997	Weak transcription ZNF genes & repeats	n/a	n/a	inside rSNPs	diseases
23	nsv561691	chr13:54237664-54240231	ZNF genes & repeats Weak transcription	n/a	n/a	inside rSNPs	diseases
24	nsv561692	chr13:54237793-54240231	Weak transcription ZNF genes & repeats	n/a	n/a	inside rSNPs	diseases
25	nsv561693	chr13:54238179-54240231	ZNF genes & repeats Weak transcription	n/a	n/a	inside rSNPs	diseases
26	nsv561694	chr13:54238301-54240106	ZNF genes & repeats Weak transcription	n/a	n/a	inside rSNPs	diseases
27	nsv561695	chr13:54238301-54240231	Weak transcription ZNF genes & repeats	n/a	n/a	inside rSNPs	diseases
28	nsv561696	chr13:54238301-54246729	Weak transcription ZNF genes & repeats	n/a	n/a	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:54238200-54238400	ZNF genes & repeats	H1 Cell Line	embryonic stem cell

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links