Variant report

Variant	rs9528396
Chromosome Location	chr13:62349656-62349657
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 20 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs17060354	0.87[ASN][1000 genomes]
rs1934847	0.81[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs4884403	0.81[AMR][1000 genomes]
rs6562207	0.81[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs7320594	0.81[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs7324306	0.81[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs7326162	0.87[ASN][1000 genomes]
rs73486504	0.87[ASN][1000 genomes]
rs9528397	0.81[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs9528398	0.81[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs9528401	0.93[CEU][hapmap]
rs9539302	0.81[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs9539305	0.81[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs9539306	0.81[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs9539307	0.81[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs9539308	0.81[AMR][1000 genomes];0.85[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2761266	chr13:61928642-62690828	Enhancers Flanking Bivalent TSS/Enh Weak transcription Bivalent Enhancer ZNF genes & repeats Flanking Active TSS Active TSS Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
2	nsv948810	chr13:62003256-62968196	Enhancers Active TSS Flanking Active TSS Weak transcription ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
3	nsv1038867	chr13:62302878-62594554	Enhancers Flanking Active TSS Active TSS Weak transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
4	nsv832629	chr13:62320369-62497238	Weak transcription Enhancers Active TSS ZNF genes & repeats Flanking Active TSS	TF binding region Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:62348600-62351800	Enhancers	Brain Inferior Temporal Lobe	brain
2	chr13:62349400-62350600	Weak transcription	Brain Anterior Caudate	brain
3	chr13:62349400-62351200	Weak transcription	Breast Myoepithelial Primary Cells	Breast
4	chr13:62349400-62351800	Enhancers	Brain Angular Gyrus	brain
5	chr13:62349600-62350400	Weak transcription	Brain Substantia Nigra	brain
6	chr13:62349600-62350800	Weak transcription	Brain Hippocampus Middle	brain
7	chr13:62349600-62351600	Enhancers	Brain Cingulate Gyrus	brain

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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