Variant report

Variant	rs9532282
Chromosome Location	chr13:39394093-39394094
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr13:39392672..39394986-chr13:39401564..39403113,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000225350	Chromatin interaction

Extended variants
information (count: 12 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs11618193	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs12867320	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1577040	0.92[AFR][1000 genomes];0.95[AMR][1000 genomes];0.91[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs4335664	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs4381466	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4408417	0.96[AFR][1000 genomes];0.95[AMR][1000 genomes];0.89[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs4587834	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs9532283	0.92[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs9548460	0.94[AFR][1000 genomes];0.93[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs963798	0.92[AMR][1000 genomes];0.95[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832585	chr13:39233307-39424375	Weak transcription Bivalent/Poised TSS Active TSS Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
2	esv2754118	chr13:39347702-40222644	Flanking Active TSS Enhancers Weak transcription ZNF genes & repeats Bivalent Enhancer Strong transcription Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	22 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:28 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:39389000-39397400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
2	chr13:39389200-39404800	Weak transcription	Gastric	stomach
3	chr13:39389400-39395800	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
4	chr13:39389400-39423000	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
5	chr13:39390000-39395800	Weak transcription	Breast Myoepithelial Primary Cells	Breast
6	chr13:39392600-39395800	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
7	chr13:39392600-39397200	Enhancers	Cortex derived primary cultured neurospheres	brain
8	chr13:39392800-39394600	Enhancers	Brain Hippocampus Middle	brain
9	chr13:39393000-39394200	Enhancers	Brain Anterior Caudate	brain
10	chr13:39393000-39394400	Enhancers	Fetal Heart	heart
11	chr13:39393000-39395000	Enhancers	Brain Substantia Nigra	brain
12	chr13:39393000-39395400	Enhancers	Colon Smooth Muscle	Colon
13	chr13:39393200-39394200	Weak transcription	Fetal Kidney	kidney
14	chr13:39393200-39394400	Enhancers	Brain Inferior Temporal Lobe	brain
15	chr13:39393200-39394600	Enhancers	Fetal Stomach	stomach
16	chr13:39393200-39397600	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
17	chr13:39393400-39396400	Enhancers	Rectal Smooth Muscle	rectum
18	chr13:39393600-39395600	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
19	chr13:39393600-39395600	Weak transcription	NHEK	skin
20	chr13:39393600-39395800	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
21	chr13:39393600-39396000	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
22	chr13:39393600-39398800	Weak transcription	iPS-18 Cell Line	embryonic stem cell
23	chr13:39393600-39400400	Weak transcription	Pancreas	Pancrea
24	chr13:39393800-39394800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
25	chr13:39393800-39394800	Weak transcription	HMEC	breast
26	chr13:39393800-39395800	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
27	chr13:39393800-39395800	Weak transcription	Brain Angular Gyrus	brain
28	chr13:39394000-39395600	Weak transcription	Brain Cingulate Gyrus	brain

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