Variant report

Variant	rs9534599
Chromosome Location	chr13:47910656-47910657
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 9 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:7)

rs_ID	r²[population]
rs2039860	0.85[ASN][1000 genomes]
rs9534594	1.00[CEU][hapmap];1.00[JPT][hapmap]
rs9534597	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs9534614	0.94[EUR][1000 genomes]
rs9562733	0.84[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs9562735	0.88[EUR][1000 genomes]
rs9567824	0.81[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2763019	chr13:47348229-48123447	Enhancers Flanking Active TSS Active TSS Bivalent Enhancer Weak transcription Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	20 gene(s)	inside rSNPs	diseases
2	esv3394678	chr13:47678184-48039379	Enhancers Active TSS Weak transcription Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:47908400-47911800	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
2	chr13:47908400-47912200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
3	chr13:47908800-47911800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
4	chr13:47908800-47911800	Weak transcription	NH-A	brain
5	chr13:47908800-47912000	Weak transcription	Osteobl	bone
6	chr13:47909200-47911600	Weak transcription	Muscle Satellite Cultured Cells	--
7	chr13:47909200-47912000	Weak transcription	NHDF-Ad	bronchial
8	chr13:47909400-47911800	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
9	chr13:47910200-47911000	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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