Variant report
| Variant | rs9534606 |
|---|---|
| Chromosome Location | chr13:47923559-47923560 |
| allele | A/G |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:26)
| rs_ID | r2[population] |
|---|---|
| rs11839303 | 0.93[EUR][1000 genomes] |
| rs11839317 | 0.93[EUR][1000 genomes] |
| rs11842050 | 0.93[EUR][1000 genomes] |
| rs2406328 | 0.93[EUR][1000 genomes] |
| rs73178170 | 0.93[EUR][1000 genomes] |
| rs73178171 | 0.93[EUR][1000 genomes] |
| rs73178173 | 0.93[EUR][1000 genomes] |
| rs73178174 | 0.93[EUR][1000 genomes] |
| rs73178176 | 0.93[EUR][1000 genomes] |
| rs73178178 | 0.93[EUR][1000 genomes] |
| rs73178186 | 0.93[EUR][1000 genomes] |
| rs73178189 | 0.93[EUR][1000 genomes] |
| rs73178191 | 0.93[EUR][1000 genomes] |
| rs73178192 | 0.93[EUR][1000 genomes] |
| rs73178199 | 0.93[EUR][1000 genomes] |
| rs73178200 | 0.93[EUR][1000 genomes] |
| rs73178201 | 0.93[EUR][1000 genomes] |
| rs73178202 | 0.93[EUR][1000 genomes] |
| rs73180305 | 0.93[EUR][1000 genomes] |
| rs73180325 | 0.93[EUR][1000 genomes] |
| rs73180332 | 0.93[EUR][1000 genomes] |
| rs7321840 | 0.93[EUR][1000 genomes] |
| rs7326674 | 1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs7998756 | 1.00[YRI][hapmap] |
| rs9526319 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs9534631 | 1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | esv2763019 | chr13:47348229-48123447 | Enhancers Flanking Active TSS Active TSS Bivalent Enhancer Weak transcription Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats | TF binding regionCpG islandChromatin interactive regionlncRNA | 20 gene(s) | inside rSNPs | diseases |
| 2 | esv3394678 | chr13:47678184-48039379 | Enhancers Active TSS Weak transcription Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh | TF binding regionCpG islandChromatin interactive regionlncRNA | 2 gene(s) | inside rSNPs | diseases |
| 3 | esv3450125 | chr13:47919050-48236684 | Flanking Active TSS Enhancers Weak transcription Active TSS Bivalent Enhancer ZNF genes & repeats | TF binding regionCpG islandChromatin interactive regionlncRNA | 4 gene(s) | inside rSNPs | diseases |
| 4 | nsv561587 | chr13:47919611-47978252 | Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats | Chromatin interactive region | n/a | inside rSNPs | diseases |
| 5 | nsv455879 | chr13:47919611-48190106 | Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Active TSS | TF binding regionCpG islandChromatin interactive regionlncRNA | 4 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr13:47923400-47926600 | Weak transcription | Fetal Brain Male | brain |
