Variant report

Variant	rs9534838
Chromosome Location	chr13:48390839-48390840
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 11 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:7)

rs_ID	r²[population]
rs11618591	1.00[ASN][1000 genomes]
rs1324800	1.00[ASN][1000 genomes]
rs17070878	1.00[ASN][1000 genomes]
rs17424172	1.00[ASN][1000 genomes]
rs56006951	1.00[ASN][1000 genomes]
rs7982822	1.00[ASN][1000 genomes]
rs9595792	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3510679	chr13:48236624-48498185	Enhancers Active TSS Weak transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
2	esv3510680	chr13:48236624-48498185	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Active TSS Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
3	nsv561589	chr13:48251736-48420218	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
4	nsv561590	chr13:48350699-48399027	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Active TSS Bivalent Enhancer	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:17 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:48385000-48392600	Weak transcription	Brain Germinal Matrix	brain
2	chr13:48387000-48392600	Enhancers	iPS-15b Cell Line	embryonic stem cell
3	chr13:48387400-48391800	Enhancers	HUES64 Cell Line	embryonic stem cell
4	chr13:48388400-48391400	Enhancers	HUES48 Cell Line	embryonic stem cell
5	chr13:48388800-48391000	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
6	chr13:48388800-48392200	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
7	chr13:48389800-48392000	Enhancers	HUES6 Cell Line	embryonic stem cell
8	chr13:48389800-48392400	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
9	chr13:48390000-48391800	Enhancers	iPS-18 Cell Line	embryonic stem cell
10	chr13:48390400-48391400	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
11	chr13:48390600-48391000	Flanking Active TSS	iPS-20b Cell Line	embryonic stem cell
12	chr13:48390600-48391400	Enhancers	ES-I3 Cell Line	embryonic stem cell
13	chr13:48390600-48392400	Enhancers	H1 Cell Line	embryonic stem cell
14	chr13:48390600-48393200	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
15	chr13:48390800-48391400	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
16	chr13:48390800-48391600	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
17	chr13:48390800-48391600	Enhancers	Cortex derived primary cultured neurospheres	brain

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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