Variant report

Variant	rs9534964
Chromosome Location	chr13:48703582-48703583
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 6 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:4)

rs_ID	r²[population]
rs56348834	1.00[AFR][1000 genomes];0.85[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs9526420	0.91[CEU][hapmap];1.00[AFR][1000 genomes];0.93[AMR][1000 genomes]
rs9534911	1.00[AFR][1000 genomes];0.81[AMR][1000 genomes]
rs9534960	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832601	chr13:48569952-48735939	Strong transcription Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	42 gene(s)	inside rSNPs	diseases
2	nsv541766	chr13:48703229-48857639	Weak transcription Strong transcription Enhancers Active TSS Genic enhancers Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	14 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:26 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:48700400-48705600	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr13:48701600-48704000	Enhancers	Primary T helper naive cells fromperipheralblood	blood
3	chr13:48701800-48705000	Weak transcription	HMEC	breast
4	chr13:48701800-48705800	Weak transcription	Primary hematopoietic stem cells	blood
5	chr13:48701800-48725800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
6	chr13:48702000-48704800	Weak transcription	Primary B cells from peripheral blood	blood
7	chr13:48702000-48705200	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
8	chr13:48702000-48705200	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
9	chr13:48702000-48705200	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
10	chr13:48702000-48705200	Weak transcription	NHEK	skin
11	chr13:48702000-48705600	Weak transcription	HUES6 Cell Line	embryonic stem cell
12	chr13:48702200-48703600	Weak transcription	Primary T killer memory cells from peripheral blood	blood
13	chr13:48702200-48704800	Weak transcription	Breast Myoepithelial Primary Cells	Breast
14	chr13:48702200-48705600	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
15	chr13:48702200-48705600	Weak transcription	HepG2	liver
16	chr13:48702200-48713800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
17	chr13:48702600-48704400	Weak transcription	Brain Hippocampus Middle	brain
18	chr13:48703200-48703600	Enhancers	Primary T cells fromperipheralblood	blood
19	chr13:48703200-48703600	Enhancers	Primary T helper cells fromperipheralblood	blood
20	chr13:48703200-48703800	Enhancers	Primary T helper naive cells from peripheral blood	blood
21	chr13:48703200-48704000	Enhancers	Fetal Thymus	thymus
22	chr13:48703200-48704000	Enhancers	Dnd41	blood
23	chr13:48703200-48704200	Enhancers	Primary T cells from cord blood	blood
24	chr13:48703400-48703600	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
25	chr13:48703400-48703600	Enhancers	Primary T helper cells PMA-I stimulated	--
26	chr13:48703400-48703600	Enhancers	Primary T killer naive cells fromperipheralblood	blood

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