Variant report

Variant	rs9535020
Chromosome Location	chr13:48923808-48923809
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 6 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:4)

rs_ID	r²[population]
rs2227311	0.86[AFR][1000 genomes];0.96[AMR][1000 genomes];0.82[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4151510	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.91[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4151620	0.89[AFR][1000 genomes]
rs9535021	1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];0.86[EUR][1000 genomes];0.98[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1039312	chr13:48898950-48925357	Enhancers ZNF genes & repeats Strong transcription Weak transcription Flanking Active TSS Active TSS Genic enhancers	TF binding region Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
2	nsv1042504	chr13:48911264-48925357	Weak transcription Strong transcription ZNF genes & repeats Enhancers Genic enhancers Active TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:99 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:48880600-48924600	Weak transcription	Psoas Muscle	Psoas
2	chr13:48892600-48927800	Weak transcription	HUVEC	blood vessel
3	chr13:48895200-48924600	Weak transcription	HSMMtube	muscle
4	chr13:48895400-48924800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
5	chr13:48895800-48926600	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
6	chr13:48903400-48924400	Weak transcription	Skeletal Muscle Male	skeletal muscle
7	chr13:48908400-48944800	Weak transcription	Small Intestine	intestine
8	chr13:48908800-48927600	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
9	chr13:48909000-48924400	Weak transcription	Osteobl	bone
10	chr13:48909000-48972200	Weak transcription	NHEK	skin
11	chr13:48911800-48948400	Weak transcription	Stomach Smooth Muscle	stomach
12	chr13:48912200-48968200	Weak transcription	Brain Cingulate Gyrus	brain
13	chr13:48913200-48924800	Weak transcription	Fetal Muscle Trunk	muscle
14	chr13:48913400-48925800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
15	chr13:48913400-48944200	Weak transcription	Aorta	Aorta
16	chr13:48913800-48924800	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
17	chr13:48913800-48924800	Weak transcription	Thymus	Thymus
18	chr13:48913800-48926200	Weak transcription	Gastric	stomach
19	chr13:48914000-48924800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
20	chr13:48914000-48924800	Weak transcription	Ovary	ovary
21	chr13:48914000-48944400	Weak transcription	Fetal Stomach	stomach
22	chr13:48914000-48965800	Weak transcription	Lung	lung
23	chr13:48914400-48926400	Weak transcription	Fetal Intestine Large	intestine
24	chr13:48914400-48927200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
25	chr13:48914600-48926600	Weak transcription	iPS-20b Cell Line	embryonic stem cell
26	chr13:48914800-48972000	Weak transcription	NHLF	lung
27	chr13:48915800-48924800	Weak transcription	HUES6 Cell Line	embryonic stem cell
28	chr13:48916200-48947400	Weak transcription	Fetal Brain Male	brain
29	chr13:48916400-48948400	Weak transcription	NH-A	brain
30	chr13:48916800-48925200	Strong transcription	Primary B cells from cord blood	blood
31	chr13:48916800-48925800	Strong transcription	Primary B cells from peripheral blood	blood
32	chr13:48916800-48985400	Weak transcription	Colonic Mucosa	Colon
33	chr13:48917000-48926200	Strong transcription	Monocytes-CD14+_RO01746	blood
34	chr13:48917600-48928400	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
35	chr13:48917800-48944400	Weak transcription	HepG2	liver
36	chr13:48918000-48924800	Strong transcription	Primary hematopoietic stem cells short term culture	blood
37	chr13:48918000-48925200	Weak transcription	Brain Substantia Nigra	brain
38	chr13:48918000-48925800	Weak transcription	Brain Germinal Matrix	brain
39	chr13:48918000-48926600	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
40	chr13:48918000-48954400	Weak transcription	Primary T killer memory cells from peripheral blood	blood
41	chr13:48918200-48937200	Weak transcription	Placenta	Placenta
42	chr13:48918400-48925200	Strong transcription	Primary monocytes fromperipheralblood	blood
43	chr13:48918400-48926200	Weak transcription	NHDF-Ad	bronchial
44	chr13:48918400-48926600	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
45	chr13:48918400-48927000	Weak transcription	A549	lung
46	chr13:48918600-48967200	Weak transcription	Sigmoid Colon	Sigmoid Colon
47	chr13:48918800-48924600	Weak transcription	Fetal Muscle Leg	muscle
48	chr13:48918800-48924800	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
49	chr13:48918800-48924800	Weak transcription	Left Ventricle	heart
50	chr13:48919200-48924200	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain

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