Variant report

Variant	rs9535562
Chromosome Location	chr13:51620070-51620071
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 9 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs12870383	0.86[CHB][hapmap]
rs1328358	0.86[CHB][hapmap]
rs4942946	0.93[CHB][hapmap]
rs56395966	0.85[AFR][1000 genomes];0.99[ASN][1000 genomes]
rs6561609	0.93[CHB][hapmap]
rs6561610	0.86[CHB][hapmap]
rs7325888	0.80[CHB][hapmap]
rs7337587	0.86[CHB][hapmap]
rs751539	1.00[CEU][hapmap];0.86[CHB][hapmap];0.88[JPT][hapmap];0.82[AMR][1000 genomes];0.87[EUR][1000 genomes];0.88[ASN][1000 genomes]

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs9535562	LOC647166	cis	substantia nigra	BrainEAC

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:51617800-51621800	Weak transcription	Cortex derived primary cultured neurospheres	brain
2	chr13:51619200-51621000	Weak transcription	Pancreas	Pancrea
3	chr13:51619600-51620200	Enhancers	Primary hematopoietic stem cells short term culture	blood
4	chr13:51619600-51621000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
5	chr13:51619800-51620600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
6	chr13:51620000-51620200	Enhancers	Fetal Muscle Leg	muscle
7	chr13:51620000-51622400	Weak transcription	Spleen	Spleen

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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