Variant report

Variant	rs9535573
Chromosome Location	chr13:51655576-51655577
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 14 )
Associated
traits (count: 4 )

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs12870315	0.90[AMR][1000 genomes]
rs12870383	0.95[CEU][hapmap];0.90[AMR][1000 genomes]
rs1328358	0.91[CEU][hapmap]
rs4605050	0.92[AMR][1000 genomes]
rs4942946	0.91[CEU][hapmap]
rs6561609	0.91[CEU][hapmap];0.87[AMR][1000 genomes]
rs6561610	0.91[CEU][hapmap];0.85[MEX][hapmap];0.90[TSI][hapmap];0.87[AMR][1000 genomes]
rs7325888	0.95[CEU][hapmap];0.90[AMR][1000 genomes]
rs7336329	0.82[AMR][1000 genomes];0.94[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7337587	0.91[CEU][hapmap];0.92[AMR][1000 genomes]
rs9535567	0.81[AMR][1000 genomes]
rs9535575	0.83[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs9596435	0.86[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832610	chr13:51636661-51822106	Bivalent/Poised TSS Enhancers Active TSS Weak transcription Flanking Active TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases

mRNA abundance (count:4)

SNP	Gene	Cis/trans	Tissue	Source
rs9535573	GUCY1B2	cis	Skin Sun Exposed Lower leg	GTEx
rs9535573	GUCY1B2	cis	Nerve Tibial	GTEx
rs9535573	GUCY1B2	cis	Esophagus Mucosa	GTEx
rs9535573	GUCY1B2	cis	lung	GTEx

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:51633400-51657800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
2	chr13:51652800-51667000	Weak transcription	Right Atrium	heart
3	chr13:51654200-51657800	Weak transcription	H9 Cell Line	embryonic stem cell
4	chr13:51654800-51671600	Weak transcription	H1 Cell Line	embryonic stem cell
5	chr13:51655000-51656000	ZNF genes & repeats	HUES6 Cell Line	embryonic stem cell
6	chr13:51655000-51656600	ZNF genes & repeats	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
7	chr13:51655000-51671200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
8	chr13:51655200-51657600	Weak transcription	iPS-20b Cell Line	embryonic stem cell
9	chr13:51655400-51655600	Weak transcription	iPS-18 Cell Line	embryonic stem cell

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links