Variant report

Variant	rs9535713
Chromosome Location	chr13:52162010-52162011
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:2)
CpG islands
(count:0)
Chromatin interactive
region (count:9)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

(count:2 , 50 per page) page: 1

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	GATA3	chr13:52161527-52162035	SH-SY5Y	brain:	n/a	n/a
2	POLR2A	chr13:52161486-52162691	HepG2	liver:	n/a	n/a

No data

(count:9 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr13:52160060..52163108-chr13:52376667..52378456,3	K562	blood:
2	chr13:52161646..52163568-chr13:52308170..52310143,2	MCF-7	breast:
3	chr13:52015950..52029988-chr13:52150583..52166755,85	MCF-7	breast:
4	chr13:52022285..52029211-chr13:52148229..52167071,88	MCF-7	breast:
5	chr13:52022475..52029228-chr13:52156654..52162250,29	K562	blood:
6	chr13:52161931..52163460-chr13:52168528..52170984,2	K562	blood:
7	chr13:52158311..52160568-chr13:52160634..52165811,6	MCF-7	breast:
8	chr13:52160060..52162638-chr13:52376878..52378456,2	K562	blood:
9	chr13:52025295..52029108-chr13:52160696..52165765,10	K562	blood:

No data

Variant related genes	Relation type
RNY1P6	TF binding region
ENSG00000236778	Chromatin interaction
ENSG00000139668	Chromatin interaction
ENSG00000102796	Chromatin interaction
ENSG00000102786	Chromatin interaction
ENSG00000231856	Chromatin interaction
ENSG00000224892	Chromatin interaction

Extended variants
information (count: 3 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:3)

rs_ID	r²[population]
rs11619776	1.00[YRI][hapmap]
rs12856726	1.00[ASW][hapmap];0.86[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[YRI][hapmap]
rs9568642	0.89[GIH][hapmap]

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs9535713	THSD1	cis	parietal	SCAN

Chromatin state (count:108 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:52159600-52162600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
2	chr13:52159600-52165000	Weak transcription	Sigmoid Colon	Sigmoid Colon
3	chr13:52159600-52165200	Weak transcription	Gastric	stomach
4	chr13:52159600-52165200	Weak transcription	Small Intestine	intestine
5	chr13:52159600-52170600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
6	chr13:52159600-52174600	Weak transcription	Spleen	Spleen
7	chr13:52159800-52162600	Weak transcription	Esophagus	oesophagus
8	chr13:52160000-52162600	Weak transcription	Fetal Intestine Large	intestine
9	chr13:52160000-52164200	Weak transcription	Liver	Liver
10	chr13:52160000-52165000	Weak transcription	Placenta Amnion	Placenta Amnion
11	chr13:52160200-52162200	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
12	chr13:52160200-52162200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
13	chr13:52160200-52162600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
14	chr13:52160200-52163200	Enhancers	Breast Myoepithelial Primary Cells	Breast
15	chr13:52160200-52164000	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
16	chr13:52160200-52164600	Weak transcription	Fetal Heart	heart
17	chr13:52160200-52165000	Weak transcription	Fetal Muscle Leg	muscle
18	chr13:52160200-52165000	Weak transcription	Fetal Stomach	stomach
19	chr13:52160200-52165200	Weak transcription	Fetal Kidney	kidney
20	chr13:52160200-52165200	Weak transcription	Left Ventricle	heart
21	chr13:52160200-52165200	Weak transcription	Skeletal Muscle Female	skeletal muscle
22	chr13:52160200-52165200	Weak transcription	Stomach Mucosa	stomach
23	chr13:52160200-52166000	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
24	chr13:52160200-52166600	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
25	chr13:52160200-52168000	Weak transcription	Pancreas	Pancrea
26	chr13:52160200-52170800	Weak transcription	Fetal Intestine Small	intestine
27	chr13:52160200-52181400	Weak transcription	Thymus	Thymus
28	chr13:52160400-52162200	Weak transcription	Adipose Nuclei	Adipose
29	chr13:52160400-52162400	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
30	chr13:52160400-52162400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
31	chr13:52160400-52162400	Weak transcription	Duodenum Smooth Muscle	Duodenum
32	chr13:52160400-52162600	Enhancers	iPS-15b Cell Line	embryonic stem cell
33	chr13:52160400-52162600	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
34	chr13:52160400-52162600	Enhancers	Primary T helper cells PMA-I stimulated	--
35	chr13:52160400-52162600	Weak transcription	Psoas Muscle	Psoas
36	chr13:52160400-52163000	Active TSS	GM12878-XiMat	blood
37	chr13:52160400-52163200	Enhancers	A549	lung
38	chr13:52160400-52163800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
39	chr13:52160400-52164000	Weak transcription	HUVEC	blood vessel
40	chr13:52160400-52165600	Weak transcription	Colon Smooth Muscle	Colon
41	chr13:52160400-52173400	Weak transcription	Right Atrium	heart
42	chr13:52160400-52177000	Weak transcription	Right Ventricle	heart
43	chr13:52160600-52162200	Enhancers	Primary hematopoietic stem cells	blood
44	chr13:52160600-52162400	Weak transcription	Aorta	Aorta
45	chr13:52160600-52165600	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
46	chr13:52160600-52169400	Weak transcription	Primary B cells from peripheral blood	blood
47	chr13:52160600-52172200	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
48	chr13:52160800-52162400	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
49	chr13:52160800-52163800	Weak transcription	Fetal Lung	lung
50	chr13:52160800-52163800	Weak transcription	NH-A	brain

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