Variant report

Variant	rs9536401
Chromosome Location	chr13:53917865-53917866
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 8 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:6)

rs_ID	r²[population]
rs1156006	0.81[EUR][1000 genomes]
rs1443914	0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2587359	0.80[ASN][1000 genomes]
rs2587363	0.89[CEU][hapmap];0.90[CHD][hapmap];0.98[GIH][hapmap];0.82[EUR][1000 genomes]
rs7981317	0.85[CHB][hapmap];0.95[CHD][hapmap];0.87[GIH][hapmap];0.91[JPT][hapmap];0.83[TSI][hapmap];0.91[ASN][1000 genomes]
rs9527069	0.82[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1050969	chr13:53665927-54064861	Bivalent Enhancer Enhancers Active TSS Weak transcription Bivalent/Poised TSS Flanking Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
2	esv2756368	chr13:53824599-53923599	Flanking Active TSS Bivalent Enhancer Weak transcription Bivalent/Poised TSS Enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:53914400-53918400	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
2	chr13:53916600-53918600	Enhancers	iPS-15b Cell Line	embryonic stem cell
3	chr13:53917400-53918200	Bivalent Enhancer	H1 Cell Line	embryonic stem cell
4	chr13:53917600-53918000	Bivalent Enhancer	iPS-20b Cell Line	embryonic stem cell
5	chr13:53917600-53918200	Enhancers	iPS-18 Cell Line	embryonic stem cell
6	chr13:53917600-53918400	Enhancers	HUES48 Cell Line	embryonic stem cell
7	chr13:53917600-53918400	Enhancers	HUES64 Cell Line	embryonic stem cell
8	chr13:53917600-53919600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
9	chr13:53917800-53918200	Weak transcription	ES-WA7 Cell Line	embryonic stem cell

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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