Variant report

Variant	rs9536706
Chromosome Location	chr13:54968639-54968640
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 19 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs11619638	0.86[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs12868191	0.86[ASN][1000 genomes]
rs1415206	0.84[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs17607240	0.86[ASN][1000 genomes]
rs1953662	0.80[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs2095619	0.80[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs2784882	0.85[ASN][1000 genomes]
rs2785933	0.85[ASN][1000 genomes]
rs2785935	0.91[CHB][hapmap];0.83[ASN][1000 genomes]
rs7323746	0.86[ASN][1000 genomes]
rs7994387	0.80[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs9316717	0.89[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs9536703	0.85[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs9536704	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9536705	0.87[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs9536710	0.84[AMR][1000 genomes];0.90[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1051063	chr13:54777487-54997866	Weak transcription Enhancers ZNF genes & repeats Bivalent Enhancer Active TSS Flanking Active TSS Strong transcription Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	Chromatin interactive region lncRNA miRNA	2 gene(s)	inside rSNPs	diseases
2	nsv541778	chr13:54777487-54997866	Weak transcription Enhancers Strong transcription Active TSS Bivalent Enhancer Genic enhancers ZNF genes & repeats Flanking Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	Chromatin interactive region lncRNA miRNA	2 gene(s)	inside rSNPs	diseases
3	esv3349795	chr13:54892694-55252030	Weak transcription Enhancers Strong transcription ZNF genes & repeats Active TSS Flanking Active TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs9536706	RCBTB1	cis	cerebellum	SCAN

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:54967600-54970400	Enhancers	Fetal Intestine Large	intestine
2	chr13:54968000-54969600	Enhancers	Fetal Intestine Small	intestine
3	chr13:54968400-54969000	Enhancers	ES-I3 Cell Line	embryonic stem cell
4	chr13:54968400-54969200	Enhancers	Duodenum Mucosa	Duodenum
5	chr13:54968400-54969600	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
6	chr13:54968400-54969600	Enhancers	iPS-15b Cell Line	embryonic stem cell
7	chr13:54968600-54968800	Enhancers	H1 Cell Line	embryonic stem cell
8	chr13:54968600-54968800	Enhancers	HUES64 Cell Line	embryonic stem cell
9	chr13:54968600-54969200	Enhancers	HUES6 Cell Line	embryonic stem cell
10	chr13:54968600-54969400	Enhancers	HUES48 Cell Line	embryonic stem cell

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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