Variant report

Variant	rs9538926
Chromosome Location	chr13:61372627-61372628
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 23 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:19)

rs_ID	r²[population]
rs11838990	0.86[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs1514168	0.80[ASN][1000 genomes]
rs3119882	0.80[ASN][1000 genomes]
rs3119883	0.80[ASN][1000 genomes]
rs3119884	0.80[ASN][1000 genomes]
rs3127029	0.80[ASN][1000 genomes]
rs3127030	0.80[ASN][1000 genomes]
rs3127033	0.90[ASN][1000 genomes]
rs4886268	0.83[EUR][1000 genomes]
rs4886269	0.84[EUR][1000 genomes]
rs4886275	0.84[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs73219646	0.82[AMR][1000 genomes];0.82[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs9285228	0.84[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs9317137	0.85[EUR][1000 genomes]
rs9528218	0.84[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs9528220	0.84[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs9538922	0.84[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs9570367	0.90[ASN][1000 genomes]
rs9598169	0.80[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv817223	chr13:60623429-61453435	Weak transcription Strong transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	41 gene(s)	inside rSNPs	diseases
2	nsv832623	chr13:61303818-61468576	ZNF genes & repeats Enhancers Weak transcription Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
3	nsv1037954	chr13:61319533-61395907	Enhancers Weak transcription Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
4	nsv561866	chr13:61328813-61388794	Weak transcription Enhancers Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:61372000-61372800	Enhancers	Fetal Intestine Small	intestine

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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