Variant report

Variant	rs9539130
Chromosome Location	chr13:61933250-61933251
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 12 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:7)

rs_ID	r²[population]
rs12863764	0.85[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1411568	0.81[AMR][1000 genomes];0.80[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs2039209	0.81[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs7327672	0.83[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs9317184	0.85[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9539129	1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9539135	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv900245	chr13:61873379-62057698	Bivalent Enhancer Enhancers Flanking Bivalent TSS/Enh Weak transcription Flanking Active TSS Active TSS Bivalent/Poised TSS Genic enhancers Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
2	nsv455904	chr13:61883623-61953406	ZNF genes & repeats Weak transcription Active TSS Enhancers Genic enhancers Strong transcription	n/a	n/a	inside rSNPs	diseases
3	nsv561867	chr13:61883623-61953406	Active TSS Enhancers Strong transcription Weak transcription ZNF genes & repeats Genic enhancers	n/a	n/a	inside rSNPs	diseases
4	nsv948661	chr13:61906251-62179649	Enhancers Weak transcription Bivalent/Poised TSS Bivalent Enhancer Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
5	esv2761266	chr13:61928642-62690828	Enhancers Flanking Bivalent TSS/Enh Weak transcription Bivalent Enhancer ZNF genes & repeats Flanking Active TSS Active TSS Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:61931200-61933400	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
2	chr13:61931800-61933400	Enhancers	iPS-15b Cell Line	embryonic stem cell
3	chr13:61932000-61933800	Enhancers	HUES48 Cell Line	embryonic stem cell
4	chr13:61932400-61933400	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
5	chr13:61932600-61933400	Enhancers	HUES64 Cell Line	embryonic stem cell
6	chr13:61932600-61933400	Enhancers	iPS-20b Cell Line	embryonic stem cell

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dbSNP/dbVar ID: rs12345 /nsv7879
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chromosomal regions: chr1:12345-34567

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