Variant report

rSNPs within LD-proxies of this variant (count:22)

rs_ID	r²[population]
rs11838926	0.84[AMR][1000 genomes];0.86[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs1340800	0.81[ASN][1000 genomes]
rs1934848	0.88[AFR][1000 genomes];0.89[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs2153566	0.80[ASN][1000 genomes]
rs2153567	0.82[ASN][1000 genomes]
rs2153568	0.82[ASN][1000 genomes]
rs4886371	0.80[CHB][hapmap];0.82[ASN][1000 genomes]
rs4886373	0.82[ASN][1000 genomes]
rs4886374	0.82[ASN][1000 genomes]
rs57604431	0.81[ASN][1000 genomes]
rs6562208	1.00[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7988690	0.82[ASN][1000 genomes]
rs7994543	0.82[ASN][1000 genomes]
rs7995118	0.80[ASN][1000 genomes]
rs7995227	0.82[ASN][1000 genomes]
rs9317201	0.90[AFR][1000 genomes];0.90[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs9317202	0.90[AFR][1000 genomes];0.90[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs9528394	0.82[ASN][1000 genomes]
rs9539298	0.82[ASN][1000 genomes]
rs9539299	0.82[ASN][1000 genomes]
rs9598356	0.81[ASN][1000 genomes]
rs9646041	0.82[YRI][hapmap]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2761266	chr13:61928642-62690828	Enhancers Flanking Bivalent TSS/Enh Weak transcription Bivalent Enhancer ZNF genes & repeats Flanking Active TSS Active TSS Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
2	nsv948810	chr13:62003256-62968196	Enhancers Active TSS Flanking Active TSS Weak transcription ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
3	nsv1038867	chr13:62302878-62594554	Enhancers Flanking Active TSS Active TSS Weak transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
4	nsv832629	chr13:62320369-62497238	Weak transcription Enhancers Active TSS ZNF genes & repeats Flanking Active TSS	TF binding region Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:19 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:62348600-62351800	Enhancers	Brain Inferior Temporal Lobe	brain
2	chr13:62349400-62351800	Enhancers	Brain Angular Gyrus	brain
3	chr13:62350400-62351800	Enhancers	Brain Substantia Nigra	brain
4	chr13:62350600-62351800	Enhancers	Brain Anterior Caudate	brain
5	chr13:62350800-62352800	Enhancers	Brain Hippocampus Middle	brain
6	chr13:62351000-62351800	Enhancers	Fetal Muscle Leg	muscle
7	chr13:62351000-62351800	Enhancers	Fetal Stomach	stomach
8	chr13:62351000-62352400	Enhancers	Fetal Lung	lung
9	chr13:62351200-62351800	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
10	chr13:62351200-62351800	Enhancers	Breast Myoepithelial Primary Cells	Breast
11	chr13:62351200-62352000	Enhancers	ES-WA7 Cell Line	embryonic stem cell
12	chr13:62351200-62352000	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
13	chr13:62351400-62351800	Enhancers	Fetal Heart	heart
14	chr13:62351400-62351800	Enhancers	Rectal Smooth Muscle	rectum
15	chr13:62351400-62352000	Enhancers	HUES48 Cell Line	embryonic stem cell
16	chr13:62351400-62352200	Enhancers	Adipose Nuclei	Adipose
17	chr13:62351600-62352600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
18	chr13:62351600-62352600	Weak transcription	HUES6 Cell Line	embryonic stem cell
19	chr13:62351600-62354400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived

Quick Search: