Variant report

rSNPs within LD-proxies of this variant (count:20)

rs_ID	r²[population]
rs11841735	0.80[YRI][hapmap];0.82[AFR][1000 genomes]
rs11842499	0.82[AFR][1000 genomes]
rs17082191	0.81[AFR][1000 genomes]
rs17590518	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs2325024	0.88[ASN][1000 genomes]
rs3013591	0.82[CEU][hapmap];1.00[CHB][hapmap];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs36080062	0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs57091770	0.82[AFR][1000 genomes]
rs59018809	0.81[AFR][1000 genomes]
rs59484997	0.95[AFR][1000 genomes]
rs60143252	0.81[AFR][1000 genomes]
rs9317643	0.84[CEU][hapmap];1.00[CHB][hapmap];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9317644	0.84[CEU][hapmap];1.00[CHB][hapmap];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9317645	0.85[CEU][hapmap];1.00[CHB][hapmap];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9529196	0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9529197	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9541019	0.83[CEU][hapmap];1.00[CHB][hapmap];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9541023	1.00[CEU][hapmap];1.00[CHB][hapmap];0.83[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9599192	0.83[CEU][hapmap];1.00[CHB][hapmap];0.93[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs9599193	0.85[CEU][hapmap];1.00[CHB][hapmap];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1035741	chr13:67212973-68077950	Enhancers Flanking Active TSS Active TSS Bivalent/Poised TSS Weak transcription Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
2	nsv541817	chr13:67212973-68077950	Weak transcription Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Active TSS Genic enhancers Bivalent/Poised TSS Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
3	nsv430581	chr13:67572850-67762288	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
4	nsv430582	chr13:67589898-67762299	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Bivalent Enhancer	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
5	nsv1053514	chr13:67687520-67775011	Weak transcription Enhancers Flanking Active TSS Active TSS Bivalent Enhancer ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:67722200-67735400	Weak transcription	Left Ventricle	heart
2	chr13:67730400-67732400	Weak transcription	A549	lung
3	chr13:67731000-67733400	Weak transcription	Brain Angular Gyrus	brain
4	chr13:67731000-67735000	Weak transcription	Brain Substantia Nigra	brain
5	chr13:67731000-67735400	Weak transcription	Brain Cingulate Gyrus	brain
6	chr13:67731000-67736800	Weak transcription	Brain Hippocampus Middle	brain
7	chr13:67731000-67751600	Weak transcription	Brain Anterior Caudate	brain
8	chr13:67731200-67732800	Weak transcription	Brain Inferior Temporal Lobe	brain
9	chr13:67731400-67795400	Weak transcription	Primary B cells from cord blood	blood

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