Variant report

Variant	rs9541071
Chromosome Location	chr13:67882042-67882043
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 40 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:33)

rs_ID	r²[population]
rs1325680	0.89[EUR][1000 genomes]
rs1325681	0.89[EUR][1000 genomes]
rs1334229	0.89[EUR][1000 genomes]
rs1889346	0.89[EUR][1000 genomes]
rs2985928	0.86[ASN][1000 genomes]
rs3013564	0.86[ASN][1000 genomes]
rs61960908	0.88[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs61960909	0.89[EUR][1000 genomes]
rs61960914	0.89[EUR][1000 genomes]
rs7139681	0.89[EUR][1000 genomes]
rs7330473	0.91[CEU][hapmap];1.00[CHB][hapmap];0.89[EUR][1000 genomes]
rs7988025	0.92[EUR][1000 genomes]
rs9529211	0.89[EUR][1000 genomes]
rs9529212	0.86[EUR][1000 genomes]
rs9529213	0.89[EUR][1000 genomes]
rs9529214	0.89[EUR][1000 genomes]
rs9529219	1.00[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9541044	0.87[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs9541045	0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9541046	0.87[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs9541047	0.88[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs9541048	0.86[EUR][1000 genomes]
rs9541049	0.89[EUR][1000 genomes]
rs9541050	0.89[EUR][1000 genomes]
rs9541051	0.89[EUR][1000 genomes]
rs9541052	0.89[EUR][1000 genomes]
rs9541053	0.89[EUR][1000 genomes]
rs9541054	0.89[EUR][1000 genomes]
rs9541056	0.89[EUR][1000 genomes]
rs9541057	0.89[EUR][1000 genomes]
rs9541058	0.89[EUR][1000 genomes]
rs9541065	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9541078	0.86[AMR][1000 genomes];0.85[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1035741	chr13:67212973-68077950	Enhancers Flanking Active TSS Active TSS Bivalent/Poised TSS Weak transcription Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
2	nsv541817	chr13:67212973-68077950	Weak transcription Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Active TSS Genic enhancers Bivalent/Poised TSS Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
3	esv2763033	chr13:67853794-68042797	Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
4	nsv1046032	chr13:67853794-68056887	Enhancers Active TSS Weak transcription Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
5	nsv527729	chr13:67854436-68047717	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
6	nsv1047135	chr13:67857898-68044958	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
7	esv3434233	chr13:67872454-68265687	Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:67874600-67882400	Weak transcription	HMEC	breast

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