Variant report

Variant	rs9543919
Chromosome Location	chr13:75967898-75967899
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr13:75967418..75969067-chr13:75972792..75975207,2	K562	blood:

Extended variants
information (count: 14 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs11148991	1.00[AMR][1000 genomes]
rs4334162	1.00[AMR][1000 genomes]
rs4396420	1.00[AMR][1000 genomes]
rs4640064	1.00[AMR][1000 genomes]
rs4883996	1.00[AMR][1000 genomes]
rs4885292	1.00[AMR][1000 genomes]
rs6562893	1.00[AMR][1000 genomes]
rs7325921	1.00[AMR][1000 genomes]
rs9318341	1.00[AMR][1000 genomes]
rs9543917	1.00[AMR][1000 genomes]
rs9543918	1.00[AMR][1000 genomes]
rs9543922	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv498067	chr13:75178898-76012362	Enhancers Active TSS Strong transcription Flanking Active TSS Weak transcription Transcr. at gene 5' and 3' Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	14 gene(s)	inside rSNPs	diseases
2	esv2761803	chr13:75943309-76161774	Strong transcription Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Active TSS Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	16 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:22 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:75959400-75968600	Weak transcription	Stomach Mucosa	stomach
2	chr13:75959600-75973400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
3	chr13:75959800-75969000	Weak transcription	Small Intestine	intestine
4	chr13:75960400-75968400	Weak transcription	Pancreatic Islets	Pancreatic Islet
5	chr13:75965800-75968000	Enhancers	Left Ventricle	heart
6	chr13:75965800-75968000	Weak transcription	Osteobl	bone
7	chr13:75966000-75968200	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
8	chr13:75966000-75969000	Weak transcription	Ovary	ovary
9	chr13:75966000-75971800	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
10	chr13:75966000-75972000	Weak transcription	Right Atrium	heart
11	chr13:75966000-75977000	Weak transcription	Right Ventricle	heart
12	chr13:75966600-75968400	Weak transcription	Skeletal Muscle Male	skeletal muscle
13	chr13:75966800-75968200	Weak transcription	Fetal Heart	heart
14	chr13:75966800-75973400	Weak transcription	Psoas Muscle	Psoas
15	chr13:75967000-75969000	Weak transcription	GM12878-XiMat	blood
16	chr13:75967200-75968400	Weak transcription	Skeletal Muscle Female	skeletal muscle
17	chr13:75967200-75971000	Weak transcription	HepG2	liver
18	chr13:75967600-75968400	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
19	chr13:75967600-75968400	Enhancers	Breast Myoepithelial Primary Cells	Breast
20	chr13:75967800-75968000	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
21	chr13:75967800-75968400	Enhancers	Muscle Satellite Cultured Cells	--
22	chr13:75967800-75968400	Weak transcription	NHLF	lung

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