Variant report

Variant	rs9543949
Chromosome Location	chr13:76075013-76075014
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr13:76074591..76077298-chr13:76079207..76081950,2	K562	blood:
2	chr13:76074143..76076070-chr13:76123601..76125267,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000261553	Chromatin interaction
ENSG00000118939	Chromatin interaction

Extended variants
information (count: 36 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:32)

rs_ID	r²[population]
rs11148993	0.84[EUR][1000 genomes]
rs12146901	1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12146907	0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12146936	0.88[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12861774	1.00[ASN][1000 genomes]
rs2146981	1.00[EUR][1000 genomes]
rs34572351	0.83[AMR][1000 genomes]
rs36043532	0.83[AMR][1000 genomes]
rs4885298	0.84[EUR][1000 genomes]
rs4885299	0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4885301	0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4885302	0.83[AMR][1000 genomes]
rs4885304	0.83[AMR][1000 genomes]
rs67211435	0.83[AMR][1000 genomes]
rs67532736	0.83[AMR][1000 genomes]
rs71215998	0.83[AMR][1000 genomes]
rs7986201	1.00[ASN][1000 genomes]
rs9318351	0.84[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9530443	0.83[AMR][1000 genomes]
rs9530444	0.83[AMR][1000 genomes]
rs9543938	1.00[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs9543941	0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9543943	1.00[AFR][1000 genomes];0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9543948	0.84[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9543950	0.83[AMR][1000 genomes]
rs9543952	0.83[AMR][1000 genomes]
rs9593081	0.84[EUR][1000 genomes]
rs9593085	0.84[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9593086	0.84[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9600482	0.84[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9634728	0.83[EUR][1000 genomes]
rs9634729	0.84[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2761803	chr13:75943309-76161774	Strong transcription Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Active TSS Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	16 gene(s)	inside rSNPs	diseases
2	nsv455987	chr13:75972846-76090084	Enhancers Flanking Active TSS Active TSS Weak transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Strong transcription ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
3	nsv562346	chr13:75972846-76090084	Enhancers Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Active TSS Bivalent Enhancer Bivalent/Poised TSS Strong transcription ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
4	nsv900562	chr13:76072743-76176680	Active TSS Strong transcription Weak transcription Flanking Active TSS Enhancers ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	12 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:0 , 50 per page) page:

No data

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