Variant report

Variant	rs9543953
Chromosome Location	chr13:76089580-76089581
allele	C/G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 35 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:31)

rs_ID	r²[population]
rs1050235	0.92[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs12146901	0.84[AMR][1000 genomes]
rs12146907	0.84[AMR][1000 genomes]
rs12865529	0.87[EUR][1000 genomes]
rs12869081	0.92[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs17064647	0.87[EUR][1000 genomes]
rs34572351	0.82[AFR][1000 genomes];0.96[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs35556048	0.87[EUR][1000 genomes]
rs35596538	0.87[EUR][1000 genomes]
rs35680815	0.83[EUR][1000 genomes]
rs35853105	0.83[EUR][1000 genomes]
rs35901810	0.92[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs36043532	0.82[AFR][1000 genomes];0.96[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs4885302	0.82[AFR][1000 genomes];0.96[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs4885303	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs4885304	0.96[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs4885310	0.83[EUR][1000 genomes]
rs6562904	0.97[EUR][1000 genomes]
rs66528354	0.92[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs66808557	0.83[EUR][1000 genomes]
rs67051742	0.92[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs67211435	0.96[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs67532736	0.96[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs71215998	0.96[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs7325969	0.83[EUR][1000 genomes]
rs9530443	0.96[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs9530444	0.96[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs9543950	0.96[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs9543952	0.96[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs9543961	0.92[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs9543962	0.85[AMR][1000 genomes];0.86[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2761803	chr13:75943309-76161774	Strong transcription Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Active TSS Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	16 gene(s)	inside rSNPs	diseases
2	nsv455987	chr13:75972846-76090084	Enhancers Flanking Active TSS Active TSS Weak transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Strong transcription ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
3	nsv562346	chr13:75972846-76090084	Enhancers Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Active TSS Bivalent Enhancer Bivalent/Poised TSS Strong transcription ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
4	nsv900562	chr13:76072743-76176680	Active TSS Strong transcription Weak transcription Flanking Active TSS Enhancers ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	12 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:76082600-76095400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
2	chr13:76088600-76090000	ZNF genes & repeats	GM12878-XiMat	blood
3	chr13:76089000-76099400	Weak transcription	Monocytes-CD14+_RO01746	blood
4	chr13:76089000-76104800	Weak transcription	NHDF-Ad	bronchial
5	chr13:76089200-76099400	Weak transcription	Dnd41	blood

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