Variant report

Variant	rs9544023
Chromosome Location	chr13:76258672-76258673
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 21 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:18)

rs_ID	r²[population]
rs7322210	0.81[AMR][1000 genomes]
rs73225927	0.90[AMR][1000 genomes]
rs7336032	0.88[AMR][1000 genomes]
rs7338461	0.88[AMR][1000 genomes]
rs9530458	0.87[AMR][1000 genomes]
rs9530459	0.88[AMR][1000 genomes]
rs9530460	0.92[AMR][1000 genomes]
rs9530461	0.92[AMR][1000 genomes]
rs9530462	0.92[AMR][1000 genomes]
rs9544017	0.88[AMR][1000 genomes]
rs9544020	0.88[AMR][1000 genomes]
rs9544021	0.88[AMR][1000 genomes]
rs9544022	0.90[AMR][1000 genomes]
rs9544024	0.92[AMR][1000 genomes]
rs9544025	0.92[AMR][1000 genomes]
rs9544026	0.92[AMR][1000 genomes]
rs9565181	0.88[AMR][1000 genomes]
rs9573612	0.91[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2751152	chr13:76144199-76288418	Weak transcription Flanking Active TSS Enhancers Strong transcription ZNF genes & repeats Active TSS Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases
2	nsv949152	chr13:76211453-76366622	Enhancers Flanking Bivalent TSS/Enh Weak transcription Genic enhancers Flanking Active TSS Strong transcription Active TSS ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
3	nsv900579	chr13:76244056-76307981	Enhancers Strong transcription Weak transcription Flanking Active TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:33 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:76213400-76267800	Weak transcription	Primary T cells from cord blood	blood
2	chr13:76236800-76267600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
3	chr13:76249400-76258800	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
4	chr13:76249800-76258800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
5	chr13:76250200-76259000	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
6	chr13:76250200-76262800	Weak transcription	Fetal Brain Male	brain
7	chr13:76251400-76258800	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
8	chr13:76251400-76259600	Weak transcription	Aorta	Aorta
9	chr13:76251600-76259200	Weak transcription	iPS-20b Cell Line	embryonic stem cell
10	chr13:76253600-76258800	Weak transcription	NH-A	brain
11	chr13:76253800-76259000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
12	chr13:76254000-76259200	Weak transcription	HepG2	liver
13	chr13:76256600-76259000	Enhancers	Breast Myoepithelial Primary Cells	Breast
14	chr13:76257600-76258800	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
15	chr13:76257600-76259400	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
16	chr13:76257800-76258800	Enhancers	NHLF	lung
17	chr13:76257800-76260400	Weak transcription	Brain Inferior Temporal Lobe	brain
18	chr13:76258000-76258800	Enhancers	Muscle Satellite Cultured Cells	--
19	chr13:76258000-76259200	Enhancers	HSMM	muscle
20	chr13:76258000-76260000	Enhancers	HUES6 Cell Line	embryonic stem cell
21	chr13:76258000-76260400	Enhancers	Placenta Amnion	Placenta Amnion
22	chr13:76258200-76258800	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
23	chr13:76258200-76258800	Enhancers	NHDF-Ad	bronchial
24	chr13:76258200-76259200	Enhancers	HMEC	breast
25	chr13:76258200-76259800	Enhancers	HUES48 Cell Line	embryonic stem cell
26	chr13:76258200-76259800	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
27	chr13:76258200-76260400	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
28	chr13:76258200-76260400	Enhancers	Placenta	Placenta
29	chr13:76258400-76259400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
30	chr13:76258400-76259600	Enhancers	HSMMtube	muscle
31	chr13:76258600-76258800	Enhancers	Osteobl	bone
32	chr13:76258600-76259600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
33	chr13:76258600-76260000	Enhancers	HUES64 Cell Line	embryonic stem cell

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