Variant report

Variant	rs9544121
Chromosome Location	chr13:76586206-76586207
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 17 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs10507846	1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs1381482	1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs2169441	0.87[AMR][1000 genomes];0.91[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs6562931	0.87[AMR][1000 genomes];0.94[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs7342475	0.84[AMR][1000 genomes];0.94[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs9530506	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs9530507	1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs9530508	1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs9544117	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9544119	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.93[AFR][1000 genomes];0.93[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9544127	0.87[AMR][1000 genomes];0.94[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs9544129	1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs9544133	1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs9646077	0.86[AMR][1000 genomes];0.98[EUR][1000 genomes];0.83[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832649	chr13:76424872-76657891	Enhancers Weak transcription Strong transcription Genic enhancers Flanking Active TSS ZNF genes & repeats Active TSS Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases
2	nsv1054431	chr13:76460431-76885094	ZNF genes & repeats Enhancers Flanking Active TSS Weak transcription Active TSS Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
3	nsv541837	chr13:76460431-76885094	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:24 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:76580400-76588400	Weak transcription	Ovary	ovary
2	chr13:76583800-76588400	Weak transcription	NHLF	lung
3	chr13:76584600-76588400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
4	chr13:76584600-76593800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
5	chr13:76585400-76586600	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
6	chr13:76585400-76586600	Enhancers	Placenta Amnion	Placenta Amnion
7	chr13:76585600-76587000	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
8	chr13:76585600-76588000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
9	chr13:76585800-76586400	Enhancers	Fetal Kidney	kidney
10	chr13:76585800-76586600	Enhancers	Osteobl	bone
11	chr13:76585800-76586800	Enhancers	A549	lung
12	chr13:76585800-76586800	Enhancers	HSMM	muscle
13	chr13:76585800-76587200	Enhancers	Muscle Satellite Cultured Cells	--
14	chr13:76586000-76586600	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
15	chr13:76586000-76586800	Flanking Active TSS	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
16	chr13:76586000-76587000	Enhancers	HMEC	breast
17	chr13:76586000-76587200	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
18	chr13:76586000-76587200	Enhancers	Fetal Heart	heart
19	chr13:76586000-76590200	Enhancers	Breast Myoepithelial Primary Cells	Breast
20	chr13:76586200-76586400	Flanking Active TSS	NH-A	brain
21	chr13:76586200-76586600	Enhancers	Aorta	Aorta
22	chr13:76586200-76586600	Flanking Active TSS	HSMMtube	muscle
23	chr13:76586200-76587000	Enhancers	Duodenum Smooth Muscle	Duodenum
24	chr13:76586200-76588400	Weak transcription	Fetal Lung	lung

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