Variant report

Variant	rs954568
Chromosome Location	chr3:120700950-120700951
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 155 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:146)

rs_ID	r²[population]
rs10212556	0.86[AFR][1000 genomes]
rs10934533	0.87[AFR][1000 genomes]
rs10934538	0.86[AFR][1000 genomes]
rs12330178	0.86[AFR][1000 genomes]
rs12486546	0.86[AFR][1000 genomes]
rs12492453	0.93[AFR][1000 genomes]
rs12493977	0.91[AFR][1000 genomes]
rs12494552	0.93[AFR][1000 genomes]
rs12496360	0.80[AFR][1000 genomes]
rs12497855	0.91[ASN][1000 genomes]
rs12498064	0.91[AFR][1000 genomes]
rs12630798	0.85[AFR][1000 genomes]
rs12632316	0.88[AFR][1000 genomes]
rs12632599	0.86[AFR][1000 genomes]
rs12633241	0.86[AFR][1000 genomes]
rs12634158	0.86[AFR][1000 genomes]
rs12635124	0.91[AFR][1000 genomes]
rs12637054	0.86[AFR][1000 genomes]
rs13314093	0.84[AFR][1000 genomes]
rs13314307	0.92[AFR][1000 genomes]
rs13316005	0.91[AFR][1000 genomes]
rs13323408	0.91[AFR][1000 genomes]
rs1403717	0.91[AFR][1000 genomes]
rs1403722	0.93[AFR][1000 genomes]
rs16831962	0.91[AFR][1000 genomes]
rs16831974	0.91[AFR][1000 genomes]
rs16831976	0.91[AFR][1000 genomes]
rs16832118	0.81[AFR][1000 genomes]
rs16832121	0.86[AFR][1000 genomes]
rs16845478	0.86[AFR][1000 genomes]
rs1920549	0.86[AFR][1000 genomes]
rs1960320	0.93[AFR][1000 genomes]
rs2220255	1.00[YRI][hapmap];0.86[AFR][1000 genomes]
rs2331514	0.86[AFR][1000 genomes]
rs28485580	0.84[AFR][1000 genomes]
rs28751972	0.93[AFR][1000 genomes]
rs2877405	0.86[AFR][1000 genomes]
rs2877406	0.86[AFR][1000 genomes]
rs2877412	0.86[AFR][1000 genomes]
rs28797282	0.93[AFR][1000 genomes]
rs28850644	0.85[AFR][1000 genomes]
rs28852138	0.85[AFR][1000 genomes]
rs35147415	0.91[AFR][1000 genomes]
rs3856577	0.86[AFR][1000 genomes]
rs3905998	0.86[AFR][1000 genomes]
rs3914738	0.86[AFR][1000 genomes]
rs3914741	0.86[AFR][1000 genomes]
rs3914742	0.86[AFR][1000 genomes]
rs4109044	0.84[AFR][1000 genomes]
rs4311161	0.93[AFR][1000 genomes]
rs4444652	0.93[AFR][1000 genomes]
rs4544547	0.86[AFR][1000 genomes]
rs4642056	0.86[AFR][1000 genomes]
rs6438597	0.91[AFR][1000 genomes]
rs6438603	0.84[AFR][1000 genomes]
rs6438606	0.84[AFR][1000 genomes]
rs6780119	0.84[AFR][1000 genomes]
rs6783166	0.84[AFR][1000 genomes]
rs6785751	0.81[AFR][1000 genomes]
rs6798684	0.86[AFR][1000 genomes]
rs6799012	0.86[AFR][1000 genomes]
rs6808418	0.84[AFR][1000 genomes]
rs7613240	0.93[AFR][1000 genomes]
rs7616617	0.86[AFR][1000 genomes]
rs7617881	0.93[AFR][1000 genomes]
rs7624337	0.93[AFR][1000 genomes]
rs7624461	0.93[AFR][1000 genomes]
rs7624738	0.93[AFR][1000 genomes]
rs7625603	0.86[AFR][1000 genomes]
rs7627802	0.85[AFR][1000 genomes]
rs7628419	0.91[AFR][1000 genomes]
rs7634173	0.86[AFR][1000 genomes]
rs7637229	0.86[AFR][1000 genomes]
rs7642063	0.91[AFR][1000 genomes]
rs7642185	0.84[AFR][1000 genomes]
rs7646709	0.85[AFR][1000 genomes]
rs7646815	0.93[AFR][1000 genomes]
rs7648074	0.91[AFR][1000 genomes]
rs7648217	0.86[AFR][1000 genomes]
rs9289150	0.85[AFR][1000 genomes]
rs9289151	0.86[AFR][1000 genomes]
rs9289161	0.86[AFR][1000 genomes]
rs9289162	0.86[AFR][1000 genomes]
rs9289163	0.85[AFR][1000 genomes]
rs9289164	0.86[AFR][1000 genomes]
rs9809411	0.93[AFR][1000 genomes]
rs9809871	0.86[AFR][1000 genomes]
rs9811686	0.91[AFR][1000 genomes]
rs9815281	0.86[AFR][1000 genomes]
rs9817971	0.93[AFR][1000 genomes]
rs9818311	0.91[AFR][1000 genomes]
rs9818910	0.91[AFR][1000 genomes]
rs9819192	0.91[AFR][1000 genomes]
rs9821483	0.80[AFR][1000 genomes]
rs9822141	0.93[AFR][1000 genomes]
rs9823442	0.86[AFR][1000 genomes]
rs9823877	0.84[AFR][1000 genomes]
rs9824653	0.83[AFR][1000 genomes]
rs9825058	0.86[AFR][1000 genomes]
rs9826042	0.87[AFR][1000 genomes]
rs9826303	0.91[AFR][1000 genomes]
rs9826818	0.85[AFR][1000 genomes]
rs9828540	0.92[AFR][1000 genomes]
rs9831352	0.91[AFR][1000 genomes]
rs9831814	0.93[AFR][1000 genomes]
rs9832737	0.86[AFR][1000 genomes]
rs9833700	0.84[AFR][1000 genomes]
rs9833950	0.93[AFR][1000 genomes]
rs9834680	0.91[AFR][1000 genomes]
rs9838136	0.84[AFR][1000 genomes]
rs9839106	0.92[AFR][1000 genomes]
rs9840595	0.91[AFR][1000 genomes]
rs9841029	0.93[AFR][1000 genomes]
rs9841572	0.86[AFR][1000 genomes]
rs9841743	0.91[AFR][1000 genomes]
rs9842097	0.93[AFR][1000 genomes]
rs9842745	0.91[AFR][1000 genomes]
rs9843421	0.85[AFR][1000 genomes]
rs9843476	0.85[AFR][1000 genomes]
rs9844059	0.83[AFR][1000 genomes]
rs9844215	0.87[AFR][1000 genomes]
rs9845595	0.85[AFR][1000 genomes]
rs9849187	0.93[AFR][1000 genomes]
rs9855455	0.86[AFR][1000 genomes]
rs9855929	0.91[AFR][1000 genomes]
rs9855953	0.91[AFR][1000 genomes]
rs9856996	0.86[ASN][1000 genomes]
rs9857987	0.93[AFR][1000 genomes]
rs9858962	0.86[AFR][1000 genomes]
rs9859088	0.86[AFR][1000 genomes]
rs9859511	0.93[AFR][1000 genomes]
rs9859729	0.93[AFR][1000 genomes]
rs9861282	0.93[AFR][1000 genomes]
rs9862407	0.93[AFR][1000 genomes]
rs9862685	0.91[AFR][1000 genomes]
rs9863475	0.93[AFR][1000 genomes]
rs9868798	0.93[AFR][1000 genomes]
rs9871403	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9871852	0.91[AFR][1000 genomes]
rs9872673	0.86[AFR][1000 genomes]
rs9873825	0.93[AFR][1000 genomes]
rs9877402	0.91[AFR][1000 genomes]
rs9878416	0.95[YRI][hapmap];0.83[AFR][1000 genomes]
rs9879469	0.93[AFR][1000 genomes]
rs9881138	0.87[AFR][1000 genomes]
rs9884037	0.93[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:9 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1007557	chr3:119892894-120764353	Enhancers Strong transcription Flanking Active TSS Weak transcription ZNF genes & repeats Bivalent/Poised TSS Active TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	49 gene(s)	inside rSNPs	diseases
2	nsv536706	chr3:119892894-120764353	Flanking Bivalent TSS/Enh Enhancers Active TSS Weak transcription Strong transcription Genic enhancers Flanking Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	49 gene(s)	inside rSNPs	diseases
3	nsv869548	chr3:120320731-121076337	Enhancers Active TSS Weak transcription Flanking Active TSS Strong transcription Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	25 gene(s)	inside rSNPs	diseases
4	nsv916869	chr3:120360281-120973169	Active TSS Weak transcription Flanking Active TSS Strong transcription ZNF genes & repeats Enhancers Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	22 gene(s)	inside rSNPs	diseases
5	esv3391166	chr3:120665311-120730822	Enhancers Weak transcription ZNF genes & repeats Active TSS	n/a	n/a	inside rSNPs	diseases
6	esv3523329	chr3:120665311-120748492	Enhancers ZNF genes & repeats Active TSS Weak transcription	n/a	n/a	inside rSNPs	diseases
7	esv3523331	chr3:120665311-120748492	Enhancers Weak transcription ZNF genes & repeats Active TSS	n/a	n/a	inside rSNPs	diseases
8	nsv1005275	chr3:120700604-121102735	Strong transcription ZNF genes & repeats Enhancers Weak transcription Flanking Active TSS Bivalent/Poised TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	4 gene(s)	inside rSNPs	diseases
9	nsv998555	chr3:120700604-121348015	Weak transcription Strong transcription Enhancers Active TSS ZNF genes & repeats Flanking Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA	19 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:120698800-120702200	Weak transcription	HUES6 Cell Line	embryonic stem cell
2	chr3:120700600-120701600	ZNF genes & repeats	Pancreatic Islets	Pancreatic Islet

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