Variant report

Variant	rs9546715
Chromosome Location	chr13:85064464-85064465
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 17 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs7983379	0.85[CHB][hapmap];0.90[JPT][hapmap]
rs7984235	0.88[CEU][hapmap];0.83[CHB][hapmap];0.90[JPT][hapmap]
rs9319053	0.83[CEU][hapmap];0.82[CHB][hapmap];0.95[JPT][hapmap]
rs9319054	0.83[CEU][hapmap];0.95[JPT][hapmap];0.81[EUR][1000 genomes]
rs9319055	0.84[CEU][hapmap];0.91[JPT][hapmap];0.81[EUR][1000 genomes]
rs935422	0.83[CEU][hapmap];0.95[JPT][hapmap]
rs9531607	0.85[CEU][hapmap];0.86[CHB][hapmap];0.84[JPT][hapmap]
rs9546716	0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9546736	0.81[EUR][1000 genomes]
rs9546737	0.89[CEU][hapmap];0.82[CHB][hapmap];0.90[JPT][hapmap]
rs9546739	0.83[CEU][hapmap];0.82[CHB][hapmap];0.95[JPT][hapmap]
rs9575593	0.83[CEU][hapmap];0.82[CHB][hapmap];0.95[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv949402	chr13:84675752-85606846	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Strong transcription Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
2	nsv456046	chr13:84971270-85262508	Enhancers ZNF genes & repeats Weak transcription Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
3	nsv562561	chr13:84971270-85262508	Flanking Active TSS Enhancers Weak transcription Active TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
4	nsv832666	chr13:85028182-85193796	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS	TF binding region Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
5	esv2760315	chr13:85046824-85070001	Enhancers Weak transcription	n/a	n/a	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:85064400-85065000	Enhancers	Pancreatic Islets	Pancreatic Islet

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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