Variant report

rSNPs within LD-proxies of this variant (count:20)

rs_ID	r²[population]
rs13313254	0.86[ASN][1000 genomes]
rs13378761	0.86[ASN][1000 genomes]
rs28456198	0.86[ASN][1000 genomes]
rs6650461	1.00[ASN][1000 genomes]
rs9546760	0.90[GIH][hapmap]
rs9546763	0.86[CEU][hapmap]
rs9546772	0.89[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9546774	0.94[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9565955	0.86[ASN][1000 genomes]
rs9565956	0.86[ASN][1000 genomes]
rs9575602	0.91[AFR][1000 genomes]
rs9575612	0.97[ASN][1000 genomes]
rs9575613	0.97[ASN][1000 genomes]
rs9575621	0.86[ASN][1000 genomes]
rs9575623	0.86[ASN][1000 genomes]
rs9593938	0.95[GIH][hapmap]
rs9602523	0.86[ASN][1000 genomes]
rs9602524	0.86[ASN][1000 genomes]
rs9602525	0.86[ASN][1000 genomes]
rs9630346	0.86[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv949402	chr13:84675752-85606846	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Strong transcription Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
2	nsv456046	chr13:84971270-85262508	Enhancers ZNF genes & repeats Weak transcription Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
3	nsv562561	chr13:84971270-85262508	Flanking Active TSS Enhancers Weak transcription Active TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
4	nsv832666	chr13:85028182-85193796	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS	TF binding region Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs9546775	FIBP	trans	cerebellum	SCAN

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:85164000-85167400	Enhancers	HUES64 Cell Line	embryonic stem cell
2	chr13:85164600-85166600	Enhancers	iPS-15b Cell Line	embryonic stem cell
3	chr13:85164600-85167000	Enhancers	HUES6 Cell Line	embryonic stem cell
4	chr13:85164600-85167000	Enhancers	iPS-20b Cell Line	embryonic stem cell
5	chr13:85164600-85167400	Enhancers	iPS-18 Cell Line	embryonic stem cell
6	chr13:85164800-85166400	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
7	chr13:85164800-85166600	Enhancers	ES-I3 Cell Line	embryonic stem cell
8	chr13:85164800-85166800	Enhancers	H1 Cell Line	embryonic stem cell
9	chr13:85165400-85167400	Enhancers	HUES48 Cell Line	embryonic stem cell
10	chr13:85166200-85167200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
11	chr13:85166200-85167400	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived

Quick Search: