Variant report

Variant	rs9547006
Chromosome Location	chr13:85552429-85552430
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 55 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:22)

rs_ID	r²[population]
rs1319807	0.85[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs1319808	0.84[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs1500683	0.85[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs3902589	0.85[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs4459458	0.85[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs7322366	0.86[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs9531687	0.86[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs9531688	0.85[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs9531689	0.85[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs9547002	0.85[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs9547003	0.85[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs9547007	0.85[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs9547008	0.85[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs9547009	0.85[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs9565982	0.89[ASN][1000 genomes]
rs9565987	0.85[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs9565988	0.85[AMR][1000 genomes];0.99[ASN][1000 genomes]
rs9565989	0.85[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs9575702	0.85[AMR][1000 genomes];0.99[ASN][1000 genomes]
rs9575703	0.85[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs9575704	0.85[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs9575705	0.85[AMR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:33 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv949402	chr13:84675752-85606846	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Strong transcription Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
2	nsv900702	chr13:85276978-85605946	Weak transcription Enhancers Active TSS ZNF genes & repeats Flanking Active TSS Bivalent/Poised TSS	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
3	nsv900703	chr13:85337948-85582307	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent/Poised TSS	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
4	nsv832667	chr13:85422787-85557377	Flanking Active TSS Enhancers Weak transcription Active TSS ZNF genes & repeats	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
5	nsv900704	chr13:85478855-85651739	Enhancers Active TSS ZNF genes & repeats Flanking Active TSS Weak transcription	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
6	nsv471161	chr13:85497445-85628777	Enhancers Active TSS ZNF genes & repeats Weak transcription Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
7	nsv430595	chr13:85499399-85566699	Enhancers Weak transcription Active TSS Flanking Active TSS	n/a	n/a	inside rSNPs	diseases
8	nsv916866	chr13:85505771-86241562	Active TSS Enhancers Genic enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
9	nsv900705	chr13:85505994-85598986	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats	n/a	n/a	inside rSNPs	diseases
10	nsv900706	chr13:85512143-85555284	Weak transcription Enhancers Active TSS Flanking Active TSS	n/a	n/a	inside rSNPs	diseases
11	nsv900707	chr13:85514351-85564579	Enhancers Active TSS Weak transcription Flanking Active TSS	n/a	n/a	inside rSNPs	diseases
12	nsv900708	chr13:85514351-85578989	Enhancers Weak transcription Flanking Active TSS Active TSS	n/a	n/a	inside rSNPs	diseases
13	nsv900709	chr13:85514351-85582307	Enhancers Weak transcription Flanking Active TSS Active TSS	n/a	n/a	inside rSNPs	diseases
14	nsv900710	chr13:85514351-85609277	Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats	n/a	n/a	inside rSNPs	diseases
15	nsv900711	chr13:85514351-85614474	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats	n/a	n/a	inside rSNPs	diseases
16	nsv900712	chr13:85514351-85709130	Active TSS Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
17	nsv1050105	chr13:85524968-86218429	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Active TSS Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
18	nsv541857	chr13:85524968-86218429	Enhancers Active TSS Weak transcription Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
19	nsv562564	chr13:85528032-85566328	Enhancers Weak transcription	n/a	n/a	inside rSNPs	diseases
20	nsv900713	chr13:85528032-85578989	Enhancers Flanking Active TSS Weak transcription Active TSS	n/a	n/a	inside rSNPs	diseases
21	nsv900714	chr13:85528032-85586719	Enhancers Weak transcription Active TSS Flanking Active TSS	n/a	n/a	inside rSNPs	diseases
22	nsv900715	chr13:85528032-85611743	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS	n/a	n/a	inside rSNPs	diseases
23	nsv900716	chr13:85528032-85614474	Weak transcription Enhancers Active TSS ZNF genes & repeats Flanking Active TSS	n/a	n/a	inside rSNPs	diseases
24	nsv562565	chr13:85532651-85586719	Weak transcription Enhancers Flanking Active TSS Active TSS	n/a	n/a	inside rSNPs	diseases
25	nsv456047	chr13:85543153-85557107	Weak transcription Enhancers	n/a	n/a	inside rSNPs	diseases
26	nsv562566	chr13:85543153-85557107	Enhancers Weak transcription	n/a	n/a	inside rSNPs	diseases
27	nsv900717	chr13:85543312-85582307	Weak transcription Enhancers Active TSS Flanking Active TSS	n/a	n/a	inside rSNPs	diseases
28	nsv821673	chr13:85548446-85969019	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
29	nsv442323	chr13:85548479-85555971	Enhancers Weak transcription	n/a	n/a	inside rSNPs	diseases
30	esv1796309	chr13:85548479-85555973	Enhancers Weak transcription	n/a	n/a	inside rSNPs	diseases
31	esv2757545	chr13:85548594-85554591	Enhancers Weak transcription	n/a	n/a	inside rSNPs	diseases
32	esv2759955	chr13:85548594-85554591	Enhancers Weak transcription	n/a	n/a	inside rSNPs	diseases
33	nsv562567	chr13:85550652-85612388	Enhancers ZNF genes & repeats Weak transcription Active TSS Flanking Active TSS	n/a	n/a	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:85549200-85552600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
2	chr13:85549400-85552600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
3	chr13:85552400-85553000	Enhancers	Fetal Kidney	kidney

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