Variant report

Variant	rs9547794
Chromosome Location	chr13:37906078-37906079
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 38 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:34)

rs_ID	r²[population]
rs2038732	0.84[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2038733	0.84[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2038734	0.84[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2093820	0.88[EUR][1000 genomes]
rs34265500	0.84[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs34783637	0.84[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs35019156	0.84[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs35789130	0.84[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs36053111	0.84[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs3858863	0.84[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs3940155	0.88[EUR][1000 genomes]
rs4943489	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73181009	0.84[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73181010	0.84[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73181011	0.84[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73181013	0.82[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs73181014	0.84[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73181015	0.84[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73181017	0.84[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73181022	0.84[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9532034	0.84[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9532035	0.84[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9532036	0.84[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs9547795	1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs9547796	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9547801	0.88[EUR][1000 genomes]
rs9547803	0.84[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9547804	0.84[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9547805	0.84[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9547806	0.84[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9547807	0.84[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9547809	0.84[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9547810	0.84[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9547811	0.84[AMR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv948975	chr13:37281203-38280430	Enhancers Flanking Active TSS Weak transcription Strong transcription Active TSS Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	50 gene(s)	inside rSNPs	diseases
2	nsv899994	chr13:37816086-38087145	Weak transcription Enhancers Flanking Active TSS Bivalent/Poised TSS Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
3	nsv1038850	chr13:37820489-38209571	Strong transcription Enhancers Active TSS Weak transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
4	esv34109	chr13:37843819-38276391	Weak transcription Enhancers Strong transcription Flanking Active TSS ZNF genes & repeats Active TSS Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:37904000-37908000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell

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