Variant report

Variant	rs9548033
Chromosome Location	chr13:38289973-38289974
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 17 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs1041018	0.82[ASN][1000 genomes]
rs1413002	0.88[GIH][hapmap];0.95[JPT][hapmap];0.83[MEX][hapmap]
rs3923854	0.81[CEU][hapmap]
rs4941876	0.84[ASN][1000 genomes]
rs7321492	0.81[CEU][hapmap]
rs7322054	0.92[CEU][hapmap];0.81[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs7323378	0.81[CEU][hapmap]
rs7336560	0.81[CEU][hapmap]
rs9532106	0.81[ASN][1000 genomes]
rs9532107	1.00[CEU][hapmap];1.00[CHB][hapmap];0.94[JPT][hapmap];0.92[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9532108	0.82[ASW][hapmap];0.96[CEU][hapmap];1.00[CHB][hapmap];0.90[CHD][hapmap];0.98[GIH][hapmap];0.87[MEX][hapmap];0.81[TSI][hapmap];0.93[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs9548028	0.95[AMR][1000 genomes];0.93[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9548031	0.93[AMR][1000 genomes];0.93[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9576308	0.81[CEU][hapmap]
rs978156	0.88[GIH][hapmap];0.95[JPT][hapmap];0.83[MEX][hapmap]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1045716	chr13:37952062-38394595	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Strong transcription Genic enhancers Active TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	4 gene(s)	inside rSNPs	diseases
2	nsv915901	chr13:38199035-39032633	Enhancers Strong transcription Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs9548033	POSTN	cis	cerebellum	SCAN

Chromatin state (count:17 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:38288600-38290000	Enhancers	HUVEC	blood vessel
2	chr13:38288600-38290200	Enhancers	Muscle Satellite Cultured Cells	--
3	chr13:38288600-38292000	Enhancers	Osteobl	bone
4	chr13:38289000-38290200	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
5	chr13:38289000-38291800	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
6	chr13:38289200-38290200	Enhancers	Ovary	ovary
7	chr13:38289200-38290200	Enhancers	Hela-S3	cervix
8	chr13:38289200-38290200	Enhancers	NHDF-Ad	bronchial
9	chr13:38289200-38290400	Enhancers	HSMM	muscle
10	chr13:38289200-38291600	Enhancers	Fetal Lung	lung
11	chr13:38289200-38291800	Enhancers	NH-A	brain
12	chr13:38289200-38291800	Enhancers	NHLF	lung
13	chr13:38289400-38290000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
14	chr13:38289400-38290600	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
15	chr13:38289400-38290600	Enhancers	Fetal Heart	heart
16	chr13:38289600-38290400	Enhancers	HSMMtube	muscle
17	chr13:38289600-38291600	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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