Variant report

Variant	rs9548087
Chromosome Location	chr13:38442757-38442758
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 16 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs12431204	0.98[AFR][1000 genomes];0.92[AMR][1000 genomes];0.90[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs1337601	0.83[ASN][1000 genomes]
rs1538145	0.98[AFR][1000 genomes];0.99[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1538146	0.82[ASN][1000 genomes]
rs1538148	0.98[AFR][1000 genomes];0.93[AMR][1000 genomes];0.95[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs1924379	0.83[ASN][1000 genomes]
rs2323637	0.96[AFR][1000 genomes];0.99[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs3812837	0.80[ASN][1000 genomes]
rs4144140	0.88[AFR][1000 genomes];0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs942345	0.82[ASN][1000 genomes]
rs9548085	0.98[AFR][1000 genomes];0.93[AMR][1000 genomes];0.95[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs9548086	0.89[AMR][1000 genomes];0.95[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs9548090	0.83[AMR][1000 genomes];0.85[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs9566272	0.93[AMR][1000 genomes];0.94[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs9576389	0.83[AFR][1000 genomes];0.93[AMR][1000 genomes];0.94[EUR][1000 genomes];0.92[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv915901	chr13:38199035-39032633	Enhancers Strong transcription Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:31 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:38439000-38442800	Weak transcription	Colon Smooth Muscle	Colon
2	chr13:38440000-38444600	Active TSS	iPS-20b Cell Line	embryonic stem cell
3	chr13:38440400-38445000	Active TSS	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
4	chr13:38440600-38445200	Active TSS	Fetal Brain Female	brain
5	chr13:38441000-38444600	Active TSS	H1 Cell Line	embryonic stem cell
6	chr13:38441000-38444600	Active TSS	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
7	chr13:38441400-38443000	Active TSS	Duodenum Smooth Muscle	Duodenum
8	chr13:38441400-38443600	Active TSS	Stomach Smooth Muscle	stomach
9	chr13:38441400-38444600	Active TSS	NHDF-Ad	bronchial
10	chr13:38441600-38443600	Flanking Active TSS	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
11	chr13:38441600-38444600	Active TSS	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
12	chr13:38441600-38444600	Active TSS	Osteobl	bone
13	chr13:38441800-38442800	Active TSS	NHLF	lung
14	chr13:38442000-38444600	Active TSS	ES-UCSF4 Cell Line	embryonic stem cell
15	chr13:38442000-38444800	Bivalent/Poised TSS	HUES48 Cell Line	embryonic stem cell
16	chr13:38442200-38444200	Active TSS	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
17	chr13:38442200-38444600	Active TSS	NH-A	brain
18	chr13:38442200-38445200	Active TSS	Pancreatic Islets	Pancreatic Islet
19	chr13:38442400-38442800	Active TSS	HUES6 Cell Line	embryonic stem cell
20	chr13:38442400-38442800	Active TSS	HUES64 Cell Line	embryonic stem cell
21	chr13:38442400-38442800	Active TSS	iPS-15b Cell Line	embryonic stem cell
22	chr13:38442400-38442800	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
23	chr13:38442400-38443000	Flanking Active TSS	H9 Derived Neuron Cultured Cells	ES cell derived
24	chr13:38442400-38443400	Flanking Active TSS	Muscle Satellite Cultured Cells	--
25	chr13:38442400-38444200	Active TSS	Ganglion Eminence derived primary cultured neurospheres	brain
26	chr13:38442400-38444400	Active TSS	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
27	chr13:38442400-38445200	Active TSS	Ovary	ovary
28	chr13:38442600-38442800	Bivalent/Poised TSS	iPS-18 Cell Line	embryonic stem cell
29	chr13:38442600-38442800	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
30	chr13:38442600-38442800	Enhancers	Brain Anterior Caudate	brain
31	chr13:38442600-38442800	Enhancers	Brain Germinal Matrix	brain

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