Variant report

Variant	rs9548699
Chromosome Location	chr13:39808332-39808333
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 46 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:40)

rs_ID	r²[population]
rs1577030	0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1889168	0.88[ASN][1000 genomes]
rs2026522	0.94[ASN][1000 genomes]
rs4328312	0.87[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.80[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4362261	0.94[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs4435117	0.95[CHB][hapmap];0.95[JPT][hapmap];0.93[ASN][1000 genomes]
rs544151	0.94[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs60345209	0.94[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs7328575	0.94[ASN][1000 genomes]
rs7330627	0.94[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs7982642	0.89[ASN][1000 genomes]
rs7988999	0.93[ASN][1000 genomes]
rs9315663	0.94[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs9532346	0.94[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs9532349	0.94[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs9532350	0.94[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs9532351	0.94[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs9532352	0.94[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs9532353	0.94[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs9532354	0.84[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs9532359	0.80[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs9548668	0.91[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs9548669	0.94[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs9548670	0.94[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs9548673	0.83[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs9548674	0.94[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs9548676	0.94[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs9548677	0.94[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs9548678	0.94[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs9548679	0.94[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs9548680	0.94[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs9548681	0.92[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs9548682	0.94[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs9548683	0.91[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs9548692	0.94[ASN][1000 genomes]
rs9548693	0.87[AFR][1000 genomes];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs9548695	0.93[AFR][1000 genomes];0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs9548697	0.93[AMR][1000 genomes];0.88[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9548698	0.97[AFR][1000 genomes];0.95[AMR][1000 genomes];0.90[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9576758	0.84[EUR][1000 genomes];0.90[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2754118	chr13:39347702-40222644	Flanking Active TSS Enhancers Weak transcription ZNF genes & repeats Bivalent Enhancer Strong transcription Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	22 gene(s)	inside rSNPs	diseases
2	nsv1048391	chr13:39735088-39832358	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
3	nsv1036124	chr13:39735088-39837566	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
4	nsv1047276	chr13:39735088-39839257	Enhancers Active TSS Weak transcription Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
5	nsv900007	chr13:39801283-39849423	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Bivalent Enhancer	Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
6	nsv1054600	chr13:39801283-40545027	Weak transcription Enhancers ZNF genes & repeats Active TSS Flanking Active TSS Strong transcription Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA	16 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:39805400-39809400	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
2	chr13:39806400-39808600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
3	chr13:39808000-39808400	Enhancers	Right Atrium	heart
4	chr13:39808200-39808600	Flanking Active TSS	Fetal Lung	lung
5	chr13:39808200-39808600	Enhancers	Ovary	ovary

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links