Variant report

Variant	rs9550444
Chromosome Location	chr13:29757566-29757567
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 28 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:22)

rs_ID	r²[population]
rs11840899	1.00[CEU][hapmap];0.97[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs1887748	0.83[EUR][1000 genomes]
rs35231942	0.83[EUR][1000 genomes]
rs35362633	0.94[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs4272875	0.82[CHB][hapmap]
rs4418907	0.83[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs57013191	1.00[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs59425466	1.00[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs71434708	0.94[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs7339092	1.00[CEU][hapmap];0.93[CHD][hapmap];0.89[LWK][hapmap];1.00[MEX][hapmap];0.84[MKK][hapmap];1.00[TSI][hapmap]
rs7993175	0.82[CHB][hapmap]
rs7999214	0.82[CHB][hapmap];0.81[CHD][hapmap]
rs8000273	1.00[CEU][hapmap];0.93[CHD][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.97[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs8001094	1.00[CEU][hapmap]
rs9550447	1.00[CEU][hapmap];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs9550452	0.83[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs9551607	0.82[CHB][hapmap]
rs9551616	1.00[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs9551619	1.00[CEU][hapmap]
rs9551620	1.00[CEU][hapmap]
rs9551633	0.82[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs9551637	1.00[CEU][hapmap]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv533835	chr13:29141132-29962069	Weak transcription Strong transcription Flanking Active TSS Bivalent/Poised TSS Enhancers Genic enhancers Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	28 gene(s)	inside rSNPs	diseases
2	esv3406145	chr13:29616606-29917459	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Bivalent Enhancer Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
3	nsv899957	chr13:29720732-29820422	Weak transcription Genic enhancers ZNF genes & repeats Enhancers Flanking Active TSS Active TSS	TF binding region Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
4	nsv427927	chr13:29729315-30062054	Enhancers Active TSS Weak transcription Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
5	nsv899958	chr13:29752497-29820422	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Genic enhancers Active TSS	TF binding region Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
6	nsv899959	chr13:29752497-29832613	Enhancers ZNF genes & repeats Flanking Active TSS Weak transcription Genic enhancers Active TSS	TF binding region Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:29753200-29765000	Weak transcription	Fetal Heart	heart

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