Variant report

Variant	rs9550482
Chromosome Location	chr13:30114777-30114778
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr13:30112955..30115406-chr13:30118439..30120354,2	MCF-7	breast:
2	chr13:30113881..30118037-chr13:30167742..30169938,3	MCF-7	breast:

Variant related genes	Relation type
ENSG00000139514	Chromatin interaction

Extended variants
information (count: 44 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:44)

rs_ID	r²[population]
rs1018679	0.94[CHB][hapmap];0.89[ASN][1000 genomes]
rs1018682	0.89[ASN][1000 genomes]
rs12428026	0.90[CHB][hapmap];0.91[JPT][hapmap];0.82[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1411928	0.85[CHB][hapmap]
rs166828	0.90[CHB][hapmap];0.82[JPT][hapmap]
rs1877463	0.90[CHB][hapmap];0.82[JPT][hapmap]
rs2026322	0.83[EUR][1000 genomes]
rs2150688	0.90[CHB][hapmap];0.89[ASN][1000 genomes]
rs2150690	0.90[CHB][hapmap]
rs2150693	0.90[CHB][hapmap];0.89[ASN][1000 genomes]
rs2183717	0.90[CHB][hapmap];1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs2236499	0.95[CHB][hapmap];1.00[AFR][1000 genomes];0.81[AMR][1000 genomes];1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs2277451	0.90[CHB][hapmap];1.00[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs2776959	0.86[CHB][hapmap]
rs2776963	0.90[CHB][hapmap];0.89[ASN][1000 genomes]
rs2802248	0.85[CHB][hapmap];0.89[ASN][1000 genomes]
rs2802249	0.91[CHB][hapmap];0.89[ASN][1000 genomes]
rs280922	0.91[CHB][hapmap];0.82[JPT][hapmap]
rs280923	0.90[CHB][hapmap];0.82[JPT][hapmap]
rs280924	0.90[CHB][hapmap]
rs280930	0.91[CHB][hapmap];0.82[JPT][hapmap]
rs280933	0.90[CHB][hapmap];0.82[JPT][hapmap]
rs280934	0.90[CHB][hapmap];0.82[JPT][hapmap]
rs280936	0.90[CHB][hapmap];0.82[JPT][hapmap]
rs2989594	0.90[CHB][hapmap];1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs3011605	0.90[CHB][hapmap];1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs3783248	0.90[CHB][hapmap];0.96[JPT][hapmap];1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs3783257	0.90[CHB][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.82[AMR][1000 genomes];0.97[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs3783259	0.91[CHB][hapmap];1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs3783260	0.90[CHB][hapmap];0.86[ASN][1000 genomes]
rs3783261	0.97[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs3783262	0.91[CHB][hapmap];0.86[ASN][1000 genomes]
rs3783263	0.91[CHB][hapmap];0.97[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs3825536	0.90[CHB][hapmap];1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs476506	0.90[CHB][hapmap]
rs57383892	0.87[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs579451	0.90[CHB][hapmap]
rs617892	0.91[CHB][hapmap];0.83[JPT][hapmap]
rs6490409	0.90[CHB][hapmap];0.86[ASN][1000 genomes]
rs72623486	0.88[EUR][1000 genomes]
rs7997827	0.90[CHB][hapmap];0.82[JPT][hapmap]
rs914362	0.90[CHB][hapmap];0.95[JPT][hapmap];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9550481	1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9551696	0.95[CHB][hapmap];0.96[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]

No data

Chromatin state (count:122 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:30071000-30128800	Strong transcription	Dnd41	blood
2	chr13:30084200-30115800	Strong transcription	Primary hematopoietic stem cells short term culture	blood
3	chr13:30085800-30115400	Strong transcription	Primary T cells from cord blood	blood
4	chr13:30092200-30133000	Weak transcription	Primary T helper naive cells from peripheral blood	blood
5	chr13:30095400-30114800	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
6	chr13:30097200-30138400	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
7	chr13:30098000-30117200	Weak transcription	Small Intestine	intestine
8	chr13:30098800-30129000	Weak transcription	Primary neutrophils fromperipheralblood	blood
9	chr13:30103800-30122200	Weak transcription	Pancreatic Islets	Pancreatic Islet
10	chr13:30103800-30137200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
11	chr13:30104200-30135400	Weak transcription	iPS-15b Cell Line	embryonic stem cell
12	chr13:30104800-30124600	Weak transcription	Right Ventricle	heart
13	chr13:30105000-30120000	Weak transcription	Brain Inferior Temporal Lobe	brain
14	chr13:30105000-30120200	Weak transcription	Brain Substantia Nigra	brain
15	chr13:30105200-30136800	Weak transcription	Brain Germinal Matrix	brain
16	chr13:30106600-30125400	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
17	chr13:30107000-30123200	Weak transcription	K562	blood
18	chr13:30107200-30120600	Weak transcription	Fetal Thymus	thymus
19	chr13:30107200-30122200	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
20	chr13:30107200-30123200	Weak transcription	A549	lung
21	chr13:30107200-30124200	Weak transcription	Placenta	Placenta
22	chr13:30107400-30114800	Weak transcription	Left Ventricle	heart
23	chr13:30107400-30115000	Weak transcription	Aorta	Aorta
24	chr13:30107400-30122600	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
25	chr13:30107400-30129200	Weak transcription	Primary T killer memory cells from peripheral blood	blood
26	chr13:30107800-30119800	Weak transcription	Primary B cells from peripheral blood	blood
27	chr13:30108000-30122600	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
28	chr13:30108800-30120000	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
29	chr13:30110400-30117400	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
30	chr13:30110400-30120000	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
31	chr13:30110400-30122200	Weak transcription	Rectal Mucosa Donor 29	rectum
32	chr13:30110400-30123200	Weak transcription	Lung	lung
33	chr13:30110400-30123400	Weak transcription	Spleen	Spleen
34	chr13:30110400-30123400	Weak transcription	NHLF	lung
35	chr13:30110400-30124200	Weak transcription	HMEC	breast
36	chr13:30110400-30127200	Weak transcription	Brain Angular Gyrus	brain
37	chr13:30110600-30115000	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
38	chr13:30110600-30119600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
39	chr13:30110600-30119600	Weak transcription	Muscle Satellite Cultured Cells	--
40	chr13:30110600-30121000	Weak transcription	Ovary	ovary
41	chr13:30110600-30122200	Weak transcription	Primary monocytes fromperipheralblood	blood
42	chr13:30110600-30123200	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
43	chr13:30110800-30115800	Enhancers	Placenta Amnion	Placenta Amnion
44	chr13:30110800-30117000	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
45	chr13:30111000-30115200	Enhancers	Fetal Brain Male	brain
46	chr13:30111200-30119400	Weak transcription	Primary hematopoietic stem cells	blood
47	chr13:30111200-30123200	Weak transcription	Primary T helper cells fromperipheralblood	blood
48	chr13:30111600-30115000	Weak transcription	Hela-S3	cervix
49	chr13:30111600-30119000	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
50	chr13:30111600-30120600	Weak transcription	HSMM	muscle

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