Variant report

Variant	rs9555688
Chromosome Location	chr13:110982170-110982171
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 4 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:1)

rs_ID	r²[population]
rs9588179	1.00[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1038914	chr13:110860219-111190104	Weak transcription Enhancers Genic enhancers Flanking Active TSS Transcr. at gene 5' and 3' Strong transcription Bivalent Enhancer ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	12 gene(s)	inside rSNPs	diseases
2	nsv1046423	chr13:110936104-111286607	Weak transcription Strong transcription Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats Active TSS Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	28 gene(s)	inside rSNPs	diseases
3	nsv1049454	chr13:110950768-111006547	Strong transcription Flanking Active TSS Genic enhancers Weak transcription Enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:84 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:110962600-110989200	Weak transcription	Rectal Mucosa Donor 29	rectum
2	chr13:110969800-110983200	Enhancers	Fetal Heart	heart
3	chr13:110972600-111007200	Weak transcription	Gastric	stomach
4	chr13:110972800-110995000	Weak transcription	Esophagus	oesophagus
5	chr13:110974000-110993000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
6	chr13:110976200-110982600	Weak transcription	HMEC	breast
7	chr13:110976600-110982400	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
8	chr13:110976800-110982600	Weak transcription	Brain Anterior Caudate	brain
9	chr13:110977000-110982600	Weak transcription	Brain Germinal Matrix	brain
10	chr13:110977800-110984200	Genic enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
11	chr13:110978400-110985200	Enhancers	NHDF-Ad	bronchial
12	chr13:110978600-110982200	Genic enhancers	Osteobl	bone
13	chr13:110979000-110983800	Weak transcription	Brain Substantia Nigra	brain
14	chr13:110979200-110983800	Weak transcription	Psoas Muscle	Psoas
15	chr13:110979200-110986200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
16	chr13:110979400-110983200	Weak transcription	Rectal Mucosa Donor 31	rectum
17	chr13:110979400-110983800	Weak transcription	Colonic Mucosa	Colon
18	chr13:110979400-110985000	Strong transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
19	chr13:110979600-110985000	Weak transcription	NHEK	skin
20	chr13:110979600-110986200	Weak transcription	Fetal Intestine Large	intestine
21	chr13:110979800-110982600	Weak transcription	Placenta	Placenta
22	chr13:110979800-110983800	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
23	chr13:110979800-110985200	Weak transcription	Pancreas	Pancrea
24	chr13:110979800-110989200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
25	chr13:110979800-110989200	Weak transcription	Brain Hippocampus Middle	brain
26	chr13:110980000-110989400	Weak transcription	Fetal Intestine Small	intestine
27	chr13:110980200-110983800	Enhancers	HUES64 Cell Line	embryonic stem cell
28	chr13:110980200-110985600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
29	chr13:110980200-110988600	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
30	chr13:110980200-110989800	Weak transcription	H1 Cell Line	embryonic stem cell
31	chr13:110980200-110993000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
32	chr13:110980200-110995400	Weak transcription	A549	lung
33	chr13:110980200-111002800	Weak transcription	Fetal Brain Male	brain
34	chr13:110980800-110983200	Enhancers	Left Ventricle	heart
35	chr13:110980800-110984400	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
36	chr13:110980800-110988000	Strong transcription	HUVEC	blood vessel
37	chr13:110981000-110982200	Weak transcription	iPS-18 Cell Line	embryonic stem cell
38	chr13:110981000-110982200	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
39	chr13:110981000-110982400	Enhancers	Right Atrium	heart
40	chr13:110981000-110982800	Strong transcription	Ganglion Eminence derived primary cultured neurospheres	brain
41	chr13:110981000-110984000	Genic enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
42	chr13:110981000-110984000	Genic enhancers	Fetal Muscle Trunk	muscle
43	chr13:110981000-110989600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
44	chr13:110981200-110982600	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
45	chr13:110981200-110986600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
46	chr13:110981400-110982400	Enhancers	Duodenum Smooth Muscle	Duodenum
47	chr13:110981400-110986000	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
48	chr13:110981600-110982200	Genic enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
49	chr13:110981600-110982200	Enhancers	Lung	lung
50	chr13:110981600-110982400	Enhancers	Ovary	ovary

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