Variant report

Variant	rs9555698
Chromosome Location	chr13:111071354-111071355
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 9 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:6)

rs_ID	r²[population]
rs10851243	0.85[ASN][1000 genomes]
rs12585289	0.81[CHB][hapmap];0.91[AMR][1000 genomes];0.86[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs61963219	0.91[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs6492270	1.00[CEU][hapmap];0.93[CHB][hapmap];1.00[JPT][hapmap];0.92[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs9515209	1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9559794	1.00[CEU][hapmap]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1038914	chr13:110860219-111190104	Weak transcription Enhancers Genic enhancers Flanking Active TSS Transcr. at gene 5' and 3' Strong transcription Bivalent Enhancer ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	12 gene(s)	inside rSNPs	diseases
2	nsv1046423	chr13:110936104-111286607	Weak transcription Strong transcription Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats Active TSS Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	28 gene(s)	inside rSNPs	diseases
3	esv2751128	chr13:111040798-111132490	Genic enhancers Strong transcription Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:74 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:111050200-111075200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr13:111060200-111082800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
3	chr13:111061000-111077000	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
4	chr13:111063800-111080800	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
5	chr13:111064200-111078000	Weak transcription	Sigmoid Colon	Sigmoid Colon
6	chr13:111064800-111071800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
7	chr13:111065000-111071400	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
8	chr13:111065000-111077000	Weak transcription	HUES6 Cell Line	embryonic stem cell
9	chr13:111065000-111077400	Weak transcription	HUES64 Cell Line	embryonic stem cell
10	chr13:111065200-111071600	Weak transcription	iPS-20b Cell Line	embryonic stem cell
11	chr13:111065200-111077000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
12	chr13:111065200-111077400	Weak transcription	Fetal Kidney	kidney
13	chr13:111065200-111082800	Weak transcription	HUES48 Cell Line	embryonic stem cell
14	chr13:111066200-111071400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
15	chr13:111066200-111073000	Weak transcription	A549	lung
16	chr13:111067400-111075200	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
17	chr13:111068000-111107000	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
18	chr13:111068200-111073000	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
19	chr13:111068200-111073200	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
20	chr13:111068400-111088600	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
21	chr13:111068600-111072000	Weak transcription	Spleen	Spleen
22	chr13:111068600-111076000	Weak transcription	Esophagus	oesophagus
23	chr13:111068600-111078000	Weak transcription	Pancreas	Pancrea
24	chr13:111068600-111082800	Weak transcription	H1 Cell Line	embryonic stem cell
25	chr13:111068600-111086800	Weak transcription	iPS-15b Cell Line	embryonic stem cell
26	chr13:111068800-111071400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
27	chr13:111068800-111071400	Weak transcription	Fetal Intestine Small	intestine
28	chr13:111068800-111071400	Weak transcription	NHEK	skin
29	chr13:111068800-111071800	Enhancers	Adipose Nuclei	Adipose
30	chr13:111068800-111071800	Enhancers	Fetal Adrenal Gland	Adrenal Gland
31	chr13:111068800-111073200	Genic enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
32	chr13:111068800-111073200	Weak transcription	Fetal Lung	lung
33	chr13:111068800-111080800	Weak transcription	Fetal Intestine Large	intestine
34	chr13:111069200-111072000	Strong transcription	IMR90 fetal lung fibroblasts Cell Line	lung
35	chr13:111069200-111073200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
36	chr13:111069800-111073600	Genic enhancers	NH-A	brain
37	chr13:111070000-111075400	Enhancers	Colon Smooth Muscle	Colon
38	chr13:111070200-111071400	Weak transcription	Placenta	Placenta
39	chr13:111070200-111071400	Enhancers	HMEC	breast
40	chr13:111070200-111073000	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
41	chr13:111070200-111073200	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
42	chr13:111070200-111073200	Strong transcription	HSMM	muscle
43	chr13:111070200-111075000	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
44	chr13:111070200-111108400	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
45	chr13:111070400-111071400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
46	chr13:111070400-111071400	Enhancers	Breast Myoepithelial Primary Cells	Breast
47	chr13:111070400-111071400	Weak transcription	Fetal Muscle Leg	muscle
48	chr13:111070400-111071400	Weak transcription	Lung	lung
49	chr13:111070400-111071400	Weak transcription	Right Ventricle	heart
50	chr13:111070400-111071400	Enhancers	Stomach Smooth Muscle	stomach

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