Variant report

Variant	rs9555744
Chromosome Location	chr13:111582414-111582415
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr13:111572866..111577227-chr13:111580925..111583141,3	K562	blood:

Extended variants
information (count: 30 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:25)

rs_ID	r²[population]
rs2391882	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2391883	0.87[CEU][hapmap];1.00[GIH][hapmap]
rs2391884	0.81[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs4300491	0.81[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs4773280	0.81[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs4773281	1.00[CEU][hapmap];1.00[GIH][hapmap];1.00[TSI][hapmap];0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs4773282	0.93[EUR][1000 genomes]
rs4773283	0.86[AFR][1000 genomes];0.87[AMR][1000 genomes];0.90[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs6492327	1.00[EUR][1000 genomes]
rs7330363	0.89[ASW][hapmap];1.00[CEU][hapmap];0.92[CHD][hapmap];0.95[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.95[TSI][hapmap];0.83[YRI][hapmap];0.84[AMR][1000 genomes]
rs7332577	1.00[CEU][hapmap];1.00[GIH][hapmap];0.95[TSI][hapmap]
rs7333318	0.89[ASW][hapmap];1.00[CEU][hapmap];0.92[CHD][hapmap];0.95[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.91[TSI][hapmap];0.83[YRI][hapmap];0.83[AMR][1000 genomes]
rs7338011	0.87[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs7997786	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7998138	1.00[CEU][hapmap];0.81[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs8000168	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs8000446	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9515315	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9515317	0.81[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs9521996	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9521997	0.99[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9521998	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9522001	0.94[CEU][hapmap];0.94[EUR][1000 genomes]
rs9555745	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9555749	0.83[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv949634	chr13:111151460-111582996	Genic enhancers Weak transcription Flanking Active TSS Enhancers Strong transcription Bivalent Enhancer Transcr. at gene 5' and 3' Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	245 gene(s)	inside rSNPs	diseases
2	nsv1044340	chr13:111234073-111692994	Bivalent Enhancer Genic enhancers Enhancers Flanking Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Weak transcription Active TSS Strong transcription ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	240 gene(s)	inside rSNPs	diseases
3	nsv1048700	chr13:111265350-111658617	Strong transcription Flanking Active TSS Enhancers Genic enhancers ZNF genes & repeats Active TSS Weak transcription Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	240 gene(s)	inside rSNPs	diseases
4	nsv1050379	chr13:111516429-111701302	Genic enhancers Flanking Active TSS Active TSS Weak transcription Enhancers Strong transcription Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	39 gene(s)	inside rSNPs	diseases
5	nsv541927	chr13:111516429-111701302	Strong transcription Enhancers Flanking Active TSS Weak transcription Bivalent Enhancer Genic enhancers Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	39 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs9555744	IRS2	cis	parietal	SCAN

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:111578400-111583400	Weak transcription	K562	blood

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