Variant report

Variant	rs9556349
Chromosome Location	chr13:87690351-87690352
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 52 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:45)

rs_ID	r²[population]
rs11620198	0.96[AMR][1000 genomes];0.94[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs12583156	0.85[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs12584162	0.96[AMR][1000 genomes];0.89[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs12585485	0.90[EUR][1000 genomes]
rs12585659	0.82[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs35199018	0.82[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs4287428	0.82[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs4495988	0.82[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs61970701	0.93[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs61970702	0.96[AMR][1000 genomes];0.92[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs61970728	0.96[AMR][1000 genomes];0.92[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs61973089	1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7324982	0.82[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs7985959	0.82[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs7986098	0.82[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs7995182	0.82[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs7996680	0.96[AMR][1000 genomes];0.92[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs9556136	0.82[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs9556142	0.82[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs9556143	0.86[EUR][1000 genomes]
rs9556144	0.82[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs9556145	0.82[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs9556174	0.85[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs9556192	0.96[AMR][1000 genomes];0.92[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs9556199	0.96[AMR][1000 genomes];0.92[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs9560921	0.82[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs9560937	0.82[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs9561005	0.82[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs9561008	0.82[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs9561009	1.00[AFR][1000 genomes];0.82[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs9561066	0.93[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs9561095	0.96[AMR][1000 genomes];0.92[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs9561105	0.96[AMR][1000 genomes];0.92[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs9561108	0.96[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs9561109	0.96[AMR][1000 genomes];0.92[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs9561122	0.96[AMR][1000 genomes];0.92[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs9561214	0.96[AMR][1000 genomes];0.94[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs9561217	0.96[AMR][1000 genomes];0.94[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs9561221	0.93[AMR][1000 genomes];0.93[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs9561257	0.96[AMR][1000 genomes];0.94[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs9561259	0.93[AMR][1000 genomes];0.94[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs9561261	0.96[AMR][1000 genomes];0.94[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs9561392	0.81[AMR][1000 genomes];0.94[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs9561404	1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs9561408	1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];0.93[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv562621	chr13:87192747-87927450	Enhancers Weak transcription ZNF genes & repeats Active TSS Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh Genic enhancers Strong transcription Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
2	esv3439251	chr13:87398732-87699077	Weak transcription Enhancers Active TSS ZNF genes & repeats Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
3	nsv1046278	chr13:87461244-87712231	Enhancers Weak transcription Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Flanking Active TSS	TF binding region Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
4	nsv1044991	chr13:87461244-87713936	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Active TSS	TF binding region Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
5	nsv832671	chr13:87539345-87707707	Enhancers Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS Bivalent Enhancer	TF binding region Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
6	nsv428607	chr13:87633567-87766875	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases
7	nsv1048011	chr13:87686985-87823029	Enhancers ZNF genes & repeats Flanking Active TSS Weak transcription Bivalent Enhancer Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:87690000-87702200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived

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