Variant report

Variant	rs9556416
Chromosome Location	chr13:95429295-95429296
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 10 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:8)

rs_ID	r²[population]
rs4771893	0.89[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs882514	0.89[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs9301996	0.88[GIH][hapmap];1.00[MEX][hapmap];0.95[TSI][hapmap];0.89[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs9524607	0.91[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs9524609	0.89[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs9524610	0.94[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs9524611	0.89[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs9524622	0.92[AMR][1000 genomes];0.96[EUR][1000 genomes];0.83[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832687	chr13:95412811-95582161	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
2	esv2763049	chr13:95414554-95445266	Enhancers Weak transcription Bivalent/Poised TSS	TF binding region Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:95422600-95431800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
2	chr13:95428600-95430000	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
3	chr13:95428800-95430200	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
4	chr13:95429200-95430000	Enhancers	HUES48 Cell Line	embryonic stem cell

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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