Variant report

Variant	rs955738
Chromosome Location	chr2:179775152-179775153
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr2:179769183..179772111-chr2:179772237..179776036,4	K562	blood:
2	chr2:179759499..179761617-chr2:179773864..179776480,2	MCF-7	breast:

Extended variants
information (count: 12 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:8)

rs_ID	r²[population]
rs10167882	0.81[ASN][1000 genomes]
rs10167919	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1387473	0.88[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1489487	0.81[ASN][1000 genomes]
rs1489490	0.86[AMR][1000 genomes];0.97[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs4894062	0.99[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs6724114	0.81[ASN][1000 genomes]
rs6747402	0.99[EUR][1000 genomes];0.93[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv949133	chr2:179711376-180124327	Flanking Active TSS ZNF genes & repeats Active TSS Enhancers Weak transcription Strong transcription Transcr. at gene 5' and 3' Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	5 gene(s)	inside rSNPs	diseases
2	nsv875455	chr2:179732845-179909467	Weak transcription Enhancers Genic enhancers Strong transcription ZNF genes & repeats Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
3	nsv583756	chr2:179758007-179843612	Weak transcription ZNF genes & repeats Strong transcription Enhancers Genic enhancers Bivalent Enhancer Flanking Active TSS Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
4	nsv1000545	chr2:179768359-179843612	ZNF genes & repeats Weak transcription Enhancers Active TSS Strong transcription Genic enhancers Flanking Active TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:25 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:179710800-179782800	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
2	chr2:179713400-179778600	Weak transcription	Primary T helper naive cells from peripheral blood	blood
3	chr2:179717000-179790600	Weak transcription	Primary T helper cells PMA-I stimulated	--
4	chr2:179733200-179779200	Weak transcription	Primary T cells fromperipheralblood	blood
5	chr2:179749800-179785200	Weak transcription	Primary T helper cells fromperipheralblood	blood
6	chr2:179751200-179775200	Weak transcription	Pancreas	Pancrea
7	chr2:179761200-179782800	Weak transcription	Right Ventricle	heart
8	chr2:179763000-179775200	Weak transcription	Psoas Muscle	Psoas
9	chr2:179770000-179788600	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
10	chr2:179770000-179848200	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
11	chr2:179770200-179789200	Weak transcription	Primary B cells from cord blood	blood
12	chr2:179771600-179775200	Weak transcription	Left Ventricle	heart
13	chr2:179771600-179781600	Weak transcription	Lung	lung
14	chr2:179772200-179779800	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
15	chr2:179773000-179775200	Weak transcription	Primary T cells from cord blood	blood
16	chr2:179773200-179775400	Enhancers	HSMM	muscle
17	chr2:179773200-179776200	Enhancers	HSMMtube	muscle
18	chr2:179774000-179776200	Enhancers	Fetal Heart	heart
19	chr2:179774600-179776200	Enhancers	Skeletal Muscle Male	skeletal muscle
20	chr2:179774600-179776600	Enhancers	Skeletal Muscle Female	skeletal muscle
21	chr2:179774800-179775400	Enhancers	Ovary	ovary
22	chr2:179774800-179775600	Enhancers	Fetal Muscle Leg	muscle
23	chr2:179775000-179775200	Enhancers	HMEC	breast
24	chr2:179775000-179775400	Weak transcription	Pancreatic Islets	Pancreatic Islet
25	chr2:179775000-179779000	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived

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