Variant report

Variant	rs9559631
Chromosome Location	chr13:110389440-110389441
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 10 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:7)

rs_ID	r²[population]
rs1004409	0.82[ASN][1000 genomes]
rs1550041	0.82[ASN][1000 genomes]
rs61962673	0.80[ASN][1000 genomes]
rs913950	0.81[ASN][1000 genomes]
rs9555630	0.80[ASN][1000 genomes]
rs9559633	0.82[ASN][1000 genomes]
rs9559636	0.80[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1044855	chr13:110301572-110408608	Weak transcription Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Active TSS Strong transcription Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	3 gene(s)	inside rSNPs	diseases
2	nsv826788	chr13:110381750-110469062	Flanking Bivalent TSS/Enh Genic enhancers Enhancers Flanking Active TSS Weak transcription Transcr. at gene 5' and 3' Strong transcription Active TSS ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	30 gene(s)	inside rSNPs	diseases
3	nsv826789	chr13:110387268-110473524	Weak transcription Genic enhancers Enhancers Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Strong transcription Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	30 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:17 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:110382600-110389800	Weak transcription	Breast Myoepithelial Primary Cells	Breast
2	chr13:110386000-110396200	Weak transcription	Gastric	stomach
3	chr13:110386200-110393000	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
4	chr13:110387000-110389600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
5	chr13:110388200-110389600	Weak transcription	Dnd41	blood
6	chr13:110388600-110392400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
7	chr13:110388800-110389600	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
8	chr13:110388800-110391000	Enhancers	Fetal Heart	heart
9	chr13:110388800-110392400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
10	chr13:110388800-110392600	Weak transcription	Primary hematopoietic stem cells short term culture	blood
11	chr13:110389000-110395600	Weak transcription	Primary hematopoietic stem cells	blood
12	chr13:110389200-110389600	Enhancers	Right Ventricle	heart
13	chr13:110389200-110390600	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
14	chr13:110389200-110390800	Enhancers	Left Ventricle	heart
15	chr13:110389400-110390400	Enhancers	Placenta Amnion	Placenta Amnion
16	chr13:110389400-110390400	Enhancers	HMEC	breast
17	chr13:110389400-110391800	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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