Variant report

Variant	rs9559730
Chromosome Location	chr13:110748112-110748113
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 16 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:6)

rs_ID	r²[population]
rs1348618	0.88[AMR][1000 genomes];0.82[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs1822852	0.85[AMR][1000 genomes];0.82[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs7339352	0.83[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7989825	0.84[AMR][1000 genomes];0.82[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs9559731	0.89[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs958952	0.88[AMR][1000 genomes];0.82[EUR][1000 genomes];0.83[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:10 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv563095	chr13:110724710-110761521	Flanking Active TSS Enhancers Weak transcription ZNF genes & repeats Active TSS Strong transcription Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
2	nsv901005	chr13:110733102-110766350	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Strong transcription Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
3	nsv515849	chr13:110742197-110761521	Enhancers Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
4	nsv456111	chr13:110742197-110761521	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
5	nsv456112	chr13:110742197-110761521	Weak transcription Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
6	nsv456113	chr13:110742197-110761521	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
7	nsv563096	chr13:110742197-110761521	Weak transcription Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
8	nsv563097	chr13:110742197-110766350	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
9	nsv456114	chr13:110742919-110761521	Flanking Bivalent TSS/Enh Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
10	nsv563098	chr13:110742919-110761521	Enhancers ZNF genes & repeats Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:22 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:110745200-110749000	Enhancers	Breast Myoepithelial Primary Cells	Breast
2	chr13:110745400-110749200	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
3	chr13:110745600-110748400	Enhancers	Pancreas	Pancrea
4	chr13:110745800-110748800	Enhancers	HMEC	breast
5	chr13:110746000-110748400	Enhancers	Brain Substantia Nigra	brain
6	chr13:110746000-110749000	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
7	chr13:110746400-110748400	Enhancers	Brain Inferior Temporal Lobe	brain
8	chr13:110746400-110748600	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
9	chr13:110747000-110750200	Enhancers	Colon Smooth Muscle	Colon
10	chr13:110747400-110748200	Enhancers	HepG2	liver
11	chr13:110747400-110748400	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
12	chr13:110747600-110748200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
13	chr13:110747600-110748200	Weak transcription	Brain Anterior Caudate	brain
14	chr13:110747600-110748400	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
15	chr13:110747600-110748400	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
16	chr13:110747600-110749200	Weak transcription	Skeletal Muscle Female	skeletal muscle
17	chr13:110747600-110749600	Weak transcription	Esophagus	oesophagus
18	chr13:110747600-110750000	Enhancers	NHEK	skin
19	chr13:110747600-110758400	Weak transcription	Rectal Smooth Muscle	rectum
20	chr13:110747800-110748200	Weak transcription	Skeletal Muscle Male	skeletal muscle
21	chr13:110747800-110749400	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
22	chr13:110747800-110749600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung

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