Variant report

Variant	rs9559753
Chromosome Location	chr13:110914530-110914531
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 8 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:6)

rs_ID	r²[population]
rs7139492	0.81[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs7316984	0.81[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs903354	0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs9515179	0.90[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs9521677	0.81[AFR][1000 genomes];0.97[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9521678	0.81[AMR][1000 genomes];0.95[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1052147	chr13:110765635-110917782	Enhancers Flanking Active TSS Weak transcription Strong transcription Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3' Active TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	2 gene(s)	inside rSNPs	diseases
2	nsv1038914	chr13:110860219-111190104	Weak transcription Enhancers Genic enhancers Flanking Active TSS Transcr. at gene 5' and 3' Strong transcription Bivalent Enhancer ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	12 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:81 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:110897800-110914800	Weak transcription	Stomach Mucosa	stomach
2	chr13:110900000-110916200	Weak transcription	A549	lung
3	chr13:110901000-110919400	Weak transcription	Fetal Brain Male	brain
4	chr13:110904200-110918200	Weak transcription	Pancreas	Pancrea
5	chr13:110906800-110915000	Weak transcription	Rectal Mucosa Donor 31	rectum
6	chr13:110909000-110914800	Weak transcription	Rectal Mucosa Donor 29	rectum
7	chr13:110909200-110917800	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
8	chr13:110911200-110915200	Enhancers	Adipose Nuclei	Adipose
9	chr13:110911200-110915800	Enhancers	NHEK	skin
10	chr13:110911200-110917200	Enhancers	Fetal Adrenal Gland	Adrenal Gland
11	chr13:110911200-110924000	Genic enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
12	chr13:110911600-110916200	Weak transcription	Cortex derived primary cultured neurospheres	brain
13	chr13:110911800-110918800	Genic enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
14	chr13:110912200-110915800	Genic enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
15	chr13:110912200-110924000	Enhancers	Left Ventricle	heart
16	chr13:110912400-110914800	Enhancers	HUVEC	blood vessel
17	chr13:110912400-110915000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
18	chr13:110912400-110915200	Weak transcription	HMEC	breast
19	chr13:110912400-110917800	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
20	chr13:110912400-110919600	Enhancers	NHDF-Ad	bronchial
21	chr13:110912800-110914800	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
22	chr13:110912800-110917000	Weak transcription	Osteobl	bone
23	chr13:110912800-110917200	Enhancers	Placenta	Placenta
24	chr13:110913000-110915000	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
25	chr13:110913000-110915600	Weak transcription	Aorta	Aorta
26	chr13:110913200-110914600	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
27	chr13:110913200-110915000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
28	chr13:110913200-110917200	Enhancers	Fetal Muscle Leg	muscle
29	chr13:110913400-110914800	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
30	chr13:110913400-110914800	Enhancers	Colon Smooth Muscle	Colon
31	chr13:110913400-110915200	Enhancers	NH-A	brain
32	chr13:110913400-110915400	Enhancers	ES-I3 Cell Line	embryonic stem cell
33	chr13:110913400-110920200	Enhancers	Fetal Heart	heart
34	chr13:110913600-110914600	Bivalent Enhancer	Skeletal Muscle Male	skeletal muscle
35	chr13:110913600-110915000	Enhancers	iPS-18 Cell Line	embryonic stem cell
36	chr13:110913600-110915000	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
37	chr13:110913600-110915000	Enhancers	Duodenum Mucosa	Duodenum
38	chr13:110913600-110915000	Enhancers	NHLF	lung
39	chr13:110913600-110915200	Enhancers	HUES48 Cell Line	embryonic stem cell
40	chr13:110913600-110915200	Enhancers	HUES64 Cell Line	embryonic stem cell
41	chr13:110913600-110915400	Enhancers	HUES6 Cell Line	embryonic stem cell
42	chr13:110913600-110916400	Enhancers	Right Ventricle	heart
43	chr13:110913600-110917400	Enhancers	Fetal Intestine Large	intestine
44	chr13:110913800-110915000	Enhancers	Rectal Smooth Muscle	rectum
45	chr13:110913800-110915200	Enhancers	iPS-20b Cell Line	embryonic stem cell
46	chr13:110913800-110915200	Genic enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
47	chr13:110913800-110915600	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
48	chr13:110913800-110916000	Enhancers	HSMM	muscle
49	chr13:110913800-110916600	Enhancers	Small Intestine	intestine
50	chr13:110913800-110917400	Enhancers	Duodenum Smooth Muscle	Duodenum

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