Variant report

Variant	rs9559757
Chromosome Location	chr13:110920539-110920540
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr13:110919933..110922792-chr13:110926003..110927619,2	K562	blood:
2	chr13:110919933..110922035-chr13:110926119..110928114,2	K562	blood:

Extended variants
information (count: 15 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs1532323	1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[ASN][1000 genomes]
rs494558	1.00[CHB][hapmap];1.00[JPT][hapmap];0.94[ASN][1000 genomes]
rs578937	0.90[ASN][1000 genomes]
rs579019	0.90[ASN][1000 genomes]
rs621006	0.81[JPT][hapmap]
rs648031	1.00[CHB][hapmap];1.00[JPT][hapmap];0.83[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7330914	1.00[CHB][hapmap];1.00[JPT][hapmap];0.82[YRI][hapmap];0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs7987099	1.00[AFR][1000 genomes];1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs9555679	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9555680	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9559754	0.83[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs9559755	0.86[CHB][hapmap];1.00[JPT][hapmap];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs9559758	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs9559759	1.00[CHB][hapmap];1.00[YRI][hapmap];0.84[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1038914	chr13:110860219-111190104	Weak transcription Enhancers Genic enhancers Flanking Active TSS Transcr. at gene 5' and 3' Strong transcription Bivalent Enhancer ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	12 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:65 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:110911200-110924000	Genic enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
2	chr13:110912200-110924000	Enhancers	Left Ventricle	heart
3	chr13:110914000-110922600	Enhancers	Right Atrium	heart
4	chr13:110915200-110936200	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
5	chr13:110915600-110935800	Weak transcription	Gastric	stomach
6	chr13:110916200-110921400	Enhancers	Cortex derived primary cultured neurospheres	brain
7	chr13:110916400-110921000	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
8	chr13:110916400-110921400	Enhancers	H1 Cell Line	embryonic stem cell
9	chr13:110916400-110921400	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
10	chr13:110916400-110921400	Enhancers	Spleen	Spleen
11	chr13:110916600-110922200	Weak transcription	HSMM	muscle
12	chr13:110916600-110935800	Weak transcription	Duodenum Mucosa	Duodenum
13	chr13:110916800-110924800	Weak transcription	HSMMtube	muscle
14	chr13:110916800-110927800	Weak transcription	Rectal Mucosa Donor 31	rectum
15	chr13:110917000-110922600	Genic enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
16	chr13:110917200-110921600	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
17	chr13:110917200-110921600	Genic enhancers	Fetal Muscle Trunk	muscle
18	chr13:110917200-110924000	Genic enhancers	Fetal Muscle Leg	muscle
19	chr13:110917400-110939000	Weak transcription	Fetal Intestine Large	intestine
20	chr13:110917800-110920600	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
21	chr13:110918000-110921000	Weak transcription	Ovary	ovary
22	chr13:110918000-110924600	Weak transcription	Fetal Kidney	kidney
23	chr13:110918200-110920600	Enhancers	Pancreas	Pancrea
24	chr13:110918200-110935800	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
25	chr13:110918400-110921200	Enhancers	Fetal Lung	lung
26	chr13:110918600-110922600	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
27	chr13:110918600-110924000	Enhancers	Rectal Smooth Muscle	rectum
28	chr13:110918600-110924200	Enhancers	Right Ventricle	heart
29	chr13:110918800-110930000	Weak transcription	Fetal Intestine Small	intestine
30	chr13:110919200-110921000	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
31	chr13:110919200-110921000	Weak transcription	Muscle Satellite Cultured Cells	--
32	chr13:110919200-110921400	Enhancers	Duodenum Smooth Muscle	Duodenum
33	chr13:110919200-110928400	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
34	chr13:110919400-110921000	Weak transcription	NH-A	brain
35	chr13:110919600-110921000	Weak transcription	Brain Hippocampus Middle	brain
36	chr13:110919600-110921400	Strong transcription	Fetal Stomach	stomach
37	chr13:110919600-110927200	Weak transcription	H9 Cell Line	embryonic stem cell
38	chr13:110919600-110928600	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
39	chr13:110919600-110938600	Weak transcription	HMEC	breast
40	chr13:110919800-110920600	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
41	chr13:110919800-110920600	Weak transcription	Breast Myoepithelial Primary Cells	Breast
42	chr13:110919800-110920600	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
43	chr13:110919800-110921000	Weak transcription	Esophagus	oesophagus
44	chr13:110919800-110921000	Weak transcription	Placenta	Placenta
45	chr13:110919800-110921200	Weak transcription	Osteobl	bone
46	chr13:110919800-110922800	Strong transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
47	chr13:110919800-110929800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
48	chr13:110919800-110937600	Weak transcription	NHEK	skin
49	chr13:110920000-110920800	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
50	chr13:110920000-110920800	Enhancers	iPS-18 Cell Line	embryonic stem cell

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