Variant report

Variant	rs9560716
Chromosome Location	chr13:91558897-91558898
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 32 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:30)

rs_ID	r²[population]
rs10507989	0.93[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1335558	0.93[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17636727	0.90[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs4255647	0.87[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs4288865	0.81[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs4341636	0.83[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs6492514	0.90[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs72633860	0.90[AFR][1000 genomes];0.96[AMR][1000 genomes];0.95[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7318850	0.83[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs7325495	0.86[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs7330260	0.81[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs7332724	0.81[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs7338251	0.90[AFR][1000 genomes];0.96[AMR][1000 genomes];0.95[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7338352	0.86[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs7985642	0.81[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs7998344	0.83[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs9301701	0.95[AFR][1000 genomes];0.97[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs9301702	0.88[AFR][1000 genomes];0.96[AMR][1000 genomes];0.89[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs9515855	0.89[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs9515867	0.83[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs9523178	0.97[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9523179	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9523194	0.90[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs9523199	0.87[AFR][1000 genomes];0.96[AMR][1000 genomes];0.92[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs9523207	0.90[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs9523227	0.81[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs9523228	0.81[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs9560719	0.95[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs9560723	0.90[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs9560724	0.90[AMR][1000 genomes];0.84[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv948709	chr13:90753085-91745571	Enhancers Weak transcription Flanking Active TSS Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA	22 gene(s)	inside rSNPs	diseases
2	nsv932206	chr13:91370888-91878374	Enhancers Weak transcription Bivalent/Poised TSS Flanking Active TSS Active TSS Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:91543800-91570800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived

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