Variant report
| Variant | rs9561251 |
|---|---|
| Chromosome Location | chr13:93729186-93729187 |
| allele | C/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:23)
| rs_ID | r2[population] |
|---|---|
| rs10492624 | 0.81[ASN][1000 genomes] |
| rs12860685 | 0.81[ASN][1000 genomes] |
| rs160266 | 0.81[ASN][1000 genomes] |
| rs2588436 | 0.81[ASN][1000 genomes] |
| rs28802592 | 0.81[ASN][1000 genomes] |
| rs35651498 | 0.81[AFR][1000 genomes] |
| rs36071455 | 0.83[AFR][1000 genomes] |
| rs465879 | 0.88[ASN][1000 genomes] |
| rs466293 | 0.88[ASN][1000 genomes] |
| rs4773706 | 0.91[ASN][1000 genomes] |
| rs66958544 | 0.83[AFR][1000 genomes] |
| rs71202572 | 0.83[ASN][1000 genomes] |
| rs72642692 | 0.81[ASN][1000 genomes] |
| rs72642693 | 0.81[ASN][1000 genomes] |
| rs72642694 | 0.81[ASN][1000 genomes] |
| rs72644515 | 0.81[ASN][1000 genomes] |
| rs7321797 | 0.83[ASN][1000 genomes] |
| rs7330229 | 1.00[CHB][hapmap];1.00[JPT][hapmap];0.91[ASN][1000 genomes] |
| rs7338423 | 0.88[ASN][1000 genomes] |
| rs7988435 | 0.81[ASN][1000 genomes] |
| rs9523901 | 0.84[ASN][1000 genomes] |
| rs9561245 | 0.81[ASN][1000 genomes] |
| rs9589672 | 0.81[ASN][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv869070 | chr13:93347616-94286933 | Enhancers Weak transcription Genic enhancers Bivalent Enhancer Flanking Active TSS Active TSS ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Strong transcription | TF binding regionCpG islandChromatin interactive regionlncRNA | 10 gene(s) | inside rSNPs | diseases |
| 2 | esv2760298 | chr13:93496826-93738391 | Enhancers Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS | TF binding regionCpG islandChromatin interactive regionlncRNA | 2 gene(s) | inside rSNPs | diseases |
| 3 | nsv900911 | chr13:93666118-93768862 | Enhancers Weak transcription Active TSS ZNF genes & repeats | TF binding regionCpG islandChromatin interactive regionlncRNA | 1 gene(s) | inside rSNPs | diseases |
| 4 | nsv832682 | chr13:93700861-93874801 | Weak transcription Enhancers Flanking Active TSS Transcr. at gene 5' and 3' Active TSS Bivalent/Poised TSS Strong transcription | TF binding regionCpG islandChromatin interactive regionlncRNA | 3 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr13:93727800-93729400 | Enhancers | Brain Germinal Matrix | brain |
