Variant report

Variant	rs9561317
Chromosome Location	chr13:93990654-93990655
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr13:93989647..93991913-chr13:93995033..93997878,2	K562	blood:
2	chr13:93980175..93981907-chr13:93988845..93990835,2	K562	blood:
3	chr13:93975150..93977138-chr13:93989003..93991236,2	K562	blood:
4	chr13:93988036..93992700-chr13:93993487..93997832,6	K562	blood:
5	chr13:93971681..93973472-chr13:93989154..93990782,2	K562	blood:
6	chr13:93989696..93991839-chr13:94003086..94004626,2	K562	blood:

Extended variants
information (count: 28 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:24)

rs_ID	r²[population]
rs1323981	0.94[AFR][1000 genomes]
rs1359199	0.85[AFR][1000 genomes]
rs17234404	1.00[CEU][hapmap];0.99[EUR][1000 genomes]
rs17300157	0.82[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs3829394	1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.84[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4142599	1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.84[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4142600	1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.82[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4771870	0.87[AFR][1000 genomes]
rs4773735	0.92[AFR][1000 genomes]
rs7332108	0.89[YRI][hapmap];0.86[AFR][1000 genomes]
rs73542897	0.82[AMR][1000 genomes];0.99[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7981910	1.00[CEU][hapmap];0.90[CHB][hapmap];1.00[JPT][hapmap];0.96[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs7984095	1.00[YRI][hapmap];0.94[AFR][1000 genomes]
rs7989707	0.82[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7994395	1.00[YRI][hapmap];0.94[AFR][1000 genomes]
rs9556282	1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.84[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs9561309	0.97[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs9561311	0.84[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9561312	1.00[YRI][hapmap];0.94[AFR][1000 genomes]
rs9561314	1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.84[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs9561318	0.92[AFR][1000 genomes]
rs9561320	1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs9561328	1.00[CEU][hapmap];0.90[CHB][hapmap];1.00[JPT][hapmap];0.96[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs9561331	0.93[EUR][1000 genomes];0.89[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv869070	chr13:93347616-94286933	Enhancers Weak transcription Genic enhancers Bivalent Enhancer Flanking Active TSS Active TSS ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
2	nsv1053035	chr13:93842576-94229732	Enhancers Flanking Active TSS Active TSS Weak transcription ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
3	nsv541880	chr13:93842576-94229732	Active TSS Flanking Active TSS Weak transcription Enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Strong transcription Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
4	nsv900919	chr13:93957816-94030693	Weak transcription Enhancers Flanking Active TSS Active TSS Genic enhancers ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:93988200-93991600	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
2	chr13:93989000-93990800	Enhancers	HUES48 Cell Line	embryonic stem cell
3	chr13:93989000-93990800	Enhancers	HUES64 Cell Line	embryonic stem cell
4	chr13:93989600-93990800	Enhancers	iPS-20b Cell Line	embryonic stem cell
5	chr13:93989600-93991800	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
6	chr13:93989800-93990800	Enhancers	ES-I3 Cell Line	embryonic stem cell
7	chr13:93989800-93990800	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
8	chr13:93990000-93990800	Enhancers	H1 Cell Line	embryonic stem cell

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