Variant report

Variant	rs9561765
Chromosome Location	chr13:95683243-95683244
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 37 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:35)

rs_ID	r²[population]
rs1151471	0.80[CHB][hapmap]
rs1189433	0.82[CEU][hapmap]
rs1189434	0.82[CEU][hapmap];0.82[TSI][hapmap]
rs1189435	0.82[CEU][hapmap];0.87[TSI][hapmap]
rs1189436	0.82[CEU][hapmap];0.87[TSI][hapmap]
rs1189437	0.82[CEU][hapmap];0.87[TSI][hapmap]
rs1189438	0.82[CEU][hapmap];0.82[TSI][hapmap]
rs1189439	0.82[CEU][hapmap];0.82[TSI][hapmap]
rs1189441	0.94[EUR][1000 genomes]
rs1189444	0.81[CHD][hapmap]
rs1189461	0.82[CEU][hapmap];0.84[GIH][hapmap];0.94[TSI][hapmap]
rs1189462	0.82[CEU][hapmap];0.84[GIH][hapmap];0.94[TSI][hapmap]
rs1189466	0.82[CEU][hapmap];0.84[GIH][hapmap];0.94[TSI][hapmap]
rs1678339	0.82[CEU][hapmap];0.84[GIH][hapmap];0.94[TSI][hapmap]
rs1678351	0.82[CEU][hapmap];0.84[GIH][hapmap];0.94[TSI][hapmap]
rs1678353	0.82[CEU][hapmap]
rs1678362	0.82[CEU][hapmap];0.82[TSI][hapmap]
rs1678365	0.82[CEU][hapmap];0.84[GIH][hapmap];0.94[TSI][hapmap]
rs1678387	0.82[CEU][hapmap];0.84[GIH][hapmap];0.94[TSI][hapmap]
rs1678409	0.82[CEU][hapmap];0.84[GIH][hapmap];0.94[TSI][hapmap]
rs1729745	0.82[CEU][hapmap];0.84[GIH][hapmap];0.94[TSI][hapmap]
rs1729752	0.82[CEU][hapmap]
rs1751036	0.82[CEU][hapmap];0.84[GIH][hapmap];0.94[TSI][hapmap]
rs1751037	0.82[CEU][hapmap];0.84[GIH][hapmap];0.94[TSI][hapmap]
rs1751042	0.82[CEU][hapmap];0.84[GIH][hapmap];0.94[TSI][hapmap]
rs1751043	0.82[CEU][hapmap];0.84[GIH][hapmap];0.94[TSI][hapmap]
rs1751055	0.82[CEU][hapmap]
rs1751057	0.82[CEU][hapmap];0.87[TSI][hapmap]
rs2766475	0.82[CEU][hapmap];0.84[GIH][hapmap];0.94[TSI][hapmap]
rs2950957	0.82[CEU][hapmap];0.84[GIH][hapmap];0.94[TSI][hapmap]
rs4148540	1.00[CEU][hapmap];0.84[GIH][hapmap];0.80[JPT][hapmap];0.82[LWK][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs5016378	0.94[CHB][hapmap];0.97[CHD][hapmap];0.95[JPT][hapmap];0.99[ASN][1000 genomes]
rs7330330	1.00[CEU][hapmap];0.87[CHB][hapmap];0.97[CHD][hapmap];1.00[GIH][hapmap];0.86[JPT][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.87[YRI][hapmap];1.00[AMR][1000 genomes];0.93[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7331488	1.00[CEU][hapmap];1.00[GIH][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs943289	0.82[CEU][hapmap];0.84[GIH][hapmap];0.94[TSI][hapmap]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832688	chr13:95633193-95780198	Flanking Bivalent TSS/Enh Weak transcription Enhancers Strong transcription Flanking Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	4 gene(s)	inside rSNPs	diseases
2	nsv525194	chr13:95672950-95737192	Strong transcription Enhancers Weak transcription Genic enhancers Active TSS ZNF genes & repeats Flanking Active TSS	TF binding region CpG island Chromatin interactive region miRNA target site	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:46 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:95655600-95722600	Weak transcription	Gastric	stomach
2	chr13:95661400-95694000	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
3	chr13:95668600-95712000	Weak transcription	NHDF-Ad	bronchial
4	chr13:95669000-95686400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
5	chr13:95669400-95686000	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
6	chr13:95669400-95690800	Weak transcription	Ovary	ovary
7	chr13:95669400-95723200	Weak transcription	Primary hematopoietic stem cells	blood
8	chr13:95669600-95686200	Weak transcription	NHLF	lung
9	chr13:95669600-95692000	Weak transcription	Primary T cells fromperipheralblood	blood
10	chr13:95669600-95744000	Weak transcription	Small Intestine	intestine
11	chr13:95670000-95690600	Weak transcription	Duodenum Mucosa	Duodenum
12	chr13:95671400-95690800	Weak transcription	Primary T helper cells fromperipheralblood	blood
13	chr13:95671400-95690800	Weak transcription	Stomach Smooth Muscle	stomach
14	chr13:95671400-95722200	Weak transcription	Rectal Smooth Muscle	rectum
15	chr13:95671600-95688600	Weak transcription	Right Ventricle	heart
16	chr13:95671600-95692200	Weak transcription	Primary hematopoietic stem cells short term culture	blood
17	chr13:95672600-95686600	Weak transcription	A549	lung
18	chr13:95672800-95729000	Weak transcription	Colonic Mucosa	Colon
19	chr13:95673000-95688600	Weak transcription	HSMMtube	muscle
20	chr13:95673200-95693200	Weak transcription	Primary T cells from cord blood	blood
21	chr13:95673600-95686600	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
22	chr13:95673600-95690800	Weak transcription	GM12878-XiMat	blood
23	chr13:95673800-95690400	Weak transcription	Rectal Mucosa Donor 29	rectum
24	chr13:95674600-95690800	Weak transcription	Sigmoid Colon	Sigmoid Colon
25	chr13:95675400-95693600	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
26	chr13:95676000-95740000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
27	chr13:95677400-95693600	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
28	chr13:95677600-95690800	Weak transcription	Lung	lung
29	chr13:95677800-95695400	Weak transcription	K562	blood
30	chr13:95677800-95718200	Weak transcription	HSMM	muscle
31	chr13:95678400-95694200	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
32	chr13:95678600-95686200	Weak transcription	Muscle Satellite Cultured Cells	--
33	chr13:95680000-95705000	Weak transcription	Colon Smooth Muscle	Colon
34	chr13:95680200-95693800	Weak transcription	Skeletal Muscle Male	skeletal muscle
35	chr13:95680400-95685800	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
36	chr13:95680400-95686200	Weak transcription	Duodenum Smooth Muscle	Duodenum
37	chr13:95681200-95687000	Strong transcription	IMR90 fetal lung fibroblasts Cell Line	lung
38	chr13:95681800-95683800	Strong transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
39	chr13:95682000-95693200	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
40	chr13:95682000-95699200	Weak transcription	Skeletal Muscle Female	skeletal muscle
41	chr13:95682000-95718200	Weak transcription	Pancreas	Pancrea
42	chr13:95682200-95686200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
43	chr13:95682800-95684800	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
44	chr13:95682800-95686200	Weak transcription	Rectal Mucosa Donor 31	rectum
45	chr13:95682800-95721800	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
46	chr13:95683200-95751800	Weak transcription	Fetal Lung	lung

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